Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0129
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.3  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    27   3.1  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    27   3.1  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    27   3.1  
SPAC2F3.04c |rim1||mitochondrial single-stranded DNA binding pro...    27   3.1  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   7.1  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   7.1  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 139 FFLENRQFQFIYIFNLVILPITFSFFVVHLFSITRPIYFTNYQIWR 2
           FFL+NR F    I N   +P+T   F++  F + +   ++  ++WR
Sbjct: 407 FFLDNRIFLLERIMNRYGIPMTIDTFLLMQFILAKSNRWS--EVWR 450


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 116 SIHLYFQSCNPSNHLFLFCSPFVFHNSP 33
           S H YF +   ++H+F+ CS   F+  P
Sbjct: 102 SSHAYFHALTENHHVFVNCSTLKFYVLP 129


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 387 FHHSFKSLRVPQIPLANWAHSQTMGFYFRNPKQF 488
           FH     L VP +PL + +HS + G   ++P  +
Sbjct: 264 FHAPIPPLHVPAVPLTSASHSSSDGKSRKHPSPY 297


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 219 RWKRINSDQKQN 254
           RWKRINS++K+N
Sbjct: 232 RWKRINSEEKRN 243


>SPAC2F3.04c |rim1||mitochondrial single-stranded DNA binding
           protein Rim1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 223 GNGSIPTKSKTKHLSKSEIFYSRNDNTD 306
           GN     K   +H+S   +FY RN N D
Sbjct: 104 GNEGSQAKMSLRHVSADVLFYPRNKNGD 131


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +1

Query: 244 KSKTKHLSKSEIFYSRNDNTDNLTYLHH*HYNEAHNCYN 360
           K+   H  ++  +Y  ND  ++  Y    HY   H+ Y+
Sbjct: 580 KTGRSHFPRAPEYYGENDFEEDEVYRDDRHYENEHDEYD 618


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 115 QFIY-IFNLVILPITFSFFVVHLFS--ITRPIYFTNYQIWR 2
           +FIY ++N  I+PI  SFF +   S    R +YF    IW+
Sbjct: 426 EFIYWLYNSFIIPILQSFFYITESSDLRNRTVYFRK-DIWK 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,884
Number of Sequences: 5004
Number of extensions: 51174
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)