Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0129
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619...    30   1.8  
01_06_1196 + 35322662-35324212                                         29   4.2  
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513...    28   5.5  
08_02_0173 - 13749975-13750052,13751097-13751216,13752095-137523...    28   7.3  

>02_02_0028 +
           6196453-6196512,6196936-6197320,6197843-6197925,
           6198060-6198183,6198404-6198523,6198595-6198755,
           6198999-6199157,6199272-6199434,6199604-6199729,
           6199775-6199900,6200400-6200764,6201204-6201404,
           6201685-6201794,6201919-6202003,6202553-6202681,
           6202763-6202868,6202984-6203072,6203172-6203474
          Length = 964

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 139 FFLENRQFQFIYIFNLVILPITFSFFVVHLFSITRPIYFTNYQIW 5
           F L +   QF+Y F  + L I+F+F     FS  R    T+Y+I+
Sbjct: 423 FRLNDYSVQFVYYFAYMNLQISFAFLTASCFSSVRTA--TDYEIY 465


>01_06_1196 + 35322662-35324212
          Length = 516

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = -2

Query: 559 NWTKTRSYCKNWFYSGCK-CFLGWLNC 482
           NW+   S+CKNW         L WL C
Sbjct: 86  NWSSVFSFCKNWLKHPLNIALLAWLLC 112


>02_01_0689 +
           5137506-5137591,5138641-5138709,5139489-5139580,
           5139967-5140289,5141373-5142479,5142593-5143279,
           5144214-5144522,5145488-5145823,5146165-5146263,
           5146676-5146940,5146950-5147104,5147666-5149723,
           5150168-5150367,5150662-5150718,5150965-5151079
          Length = 1985

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 85  LPITFS-FFVVHLFSIT-RPIYFTNYQIW 5
           LP+ +S FF+  L  I  RP Y  +YQIW
Sbjct: 193 LPVQYSDFFITSLGEIDKRPSYHNSYQIW 221


>08_02_0173 -
           13749975-13750052,13751097-13751216,13752095-13752348,
           13752353-13752651,13753091-13753197,13753293-13753431,
           13753863-13754030,13755367-13755476,13755830-13755934,
           13757398-13757499,13757546-13757671,13757843-13758055,
           13758133-13758195
          Length = 627

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 157 VHHIDDHFYNKILSSSCTLANVGNGSIPTKSKTKHLSKS 273
           +  +  H YN    SS TL+ V N  +PT + T  L  S
Sbjct: 226 LEELHSHLYNNGEYSSVTLSMVDNEELPTSTATGRLVNS 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,390,741
Number of Sequences: 37544
Number of extensions: 293678
Number of successful extensions: 624
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)