Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0129
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50570| Best HMM Match : PAN (HMM E-Value=0.0011)                    30   1.9  
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)               27   9.9  

>SB_50570| Best HMM Match : PAN (HMM E-Value=0.0011)
          Length = 138

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -1

Query: 269 LLRCFVLLLVGIDPFPTFAKVQLEDSILL*KWSSIWWT*LIRLILSRKQAVSIHLYFQSC 90
           LL  FVL  VGID +PT    + +   +           L+ +++SR   +S    F  C
Sbjct: 6   LLLLFVLTAVGIDAYPTCFSTESQQGRV-----------LVNIVISRVSTISFQRCFYKC 54

Query: 89  NPSNHLFLF 63
           +   + F F
Sbjct: 55  SKEQNCFSF 63


>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
          Length = 690

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 174 PLLQQNTILQLYLGERWKRINSDQKQ 251
           PL + N + +L  GE WK++N +QK+
Sbjct: 524 PLPKANEVAKL-AGEEWKKLNDEQKK 548


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,365,145
Number of Sequences: 59808
Number of extensions: 373166
Number of successful extensions: 829
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)