Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0129
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.4  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   5.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.7  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 109 IYIFNLVILPITFSFF 62
           + + NL+ILP+  SFF
Sbjct: 98  LLVANLIILPVAISFF 113


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 109 IYIFNLVILPITFSFF 62
           + + NL+ILP+  SFF
Sbjct: 98  LLVANLIILPVAISFF 113


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 109 IYIFNLVILPITFSFF 62
           + + NL+ILP+  SFF
Sbjct: 98  LLVANLIILPVAISFF 113


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 241 TKSKTKHLSKSEIFYSRNDNTDNLTYLHH*HYNEAHNCYNS 363
           ++++T+     E     N+N+ +  Y ++ +YN  +N YN+
Sbjct: 67  SRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNNNYNT 107


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 94  LVILPITFSFFVVHLFSITRPI 29
           +VILP      + H F + RP+
Sbjct: 232 MVILPDLVGKKITHFFDLVRPL 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,135
Number of Sequences: 438
Number of extensions: 4092
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)