Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0129
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19960.1 68417.m02923 potassium transporter family protein si...    30   1.1  
At4g02290.1 68417.m00310 glycosyl hydrolase family 9 protein sim...    30   1.5  
At4g28530.1 68417.m04082 no apical meristem (NAM) family protein...    29   3.5  
At3g01840.1 68416.m00125 protein kinase family protein contains ...    28   4.6  
At4g15236.1 68417.m02335 ABC transporter family protein similar ...    28   6.1  
At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR...    28   6.1  
At3g24560.2 68416.m03084 expressed protein  contains Pfam profil...    27   8.1  

>At4g19960.1 68417.m02923 potassium transporter family protein
           similar to potassium transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 842

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 157 VHHIDDHFYNKILSSSCTLANVGNGSIPTKSKTKHLSKSEIFYSRNDNTDNLTYLHH*HY 336
           +H  DD F NK+L+   +   +     PT + + + S     YS N   D+   L H + 
Sbjct: 668 LHKKDDDFENKLLTKLSSFIRIETMMEPTSNSSTYSST----YSVNHTQDSTVDLIHNNN 723

Query: 337 NEAHN 351
           N  HN
Sbjct: 724 NHNHN 728


>At4g02290.1 68417.m00310 glycosyl hydrolase family 9 protein
           similar to endo-1,4-beta glucanase; ATCEL2 GI:3132891
           from [Arabidopsis thaliana]
          Length = 516

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +1

Query: 181 YNKILSSSCTLANVGNGSIPTKSKTKHLSKSEIFYSRNDNTDNLTYL 321
           Y K L+S+ T+ + G GS+ T  + + ++K ++ Y   DN   ++Y+
Sbjct: 376 YAKYLTSAKTVVHCG-GSVYTPGRLRSIAKRQVDYLLGDNPLRMSYM 421


>At4g28530.1 68417.m04082 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           No apical meristem gene (NAM), required for pattern
           formation in embryos and flowers-Petunia hybrida,
           PATCHX:E205713
          Length = 352

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +1

Query: 160 HHIDDHFYNKILSSSCTLANVGNGSIPTKSKTKHLSKSEIFYSRNDNTDNLTYLHH*HYN 339
           H    H +++ ++       +G+ S P+     H S   + Y  N+N+ N++  HH +Y 
Sbjct: 244 HPYHHHCHHQTIACGWEQMMIGSLSSPSSHGPDHESLLNLLYVDNNNSVNISGDHHQNYE 303

Query: 340 E 342
           +
Sbjct: 304 K 304


>At3g01840.1 68416.m00125 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 654

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 559 NWTKTRSYCKNWFYSGCKCFLGW 491
           +W + +   KN F   C CFL W
Sbjct: 423 DWIQNKLAIKNQFIESCYCFLAW 445


>At4g15236.1 68417.m02335 ABC transporter family protein similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1388

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 250  CFWSELIRFQRSPRYN-WRIVFCC 182
            C W + + + R+P YN  RI+F C
Sbjct: 1118 CLWKQHLSYWRNPSYNLTRIIFMC 1141


>At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1007

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 3/21 (14%)
 Frame = -1

Query: 77   HLFLF--CSPFVFHNS-PYIF 24
            HLF+F  C PF+FH+  P+IF
Sbjct: 946  HLFIFHSCLPFIFHSCLPFIF 966


>At3g24560.2 68416.m03084 expressed protein  contains Pfam profile
           PF01171: PP-loop family
          Length = 660

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 82  EGLQD*KYR*IETACFRERIRRIN*VHHIDD 174
           E  ++ +Y  I   CFR++I  +   HH DD
Sbjct: 175 EAAREMRYEMISNVCFRQQIEVLLIAHHADD 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,915,306
Number of Sequences: 28952
Number of extensions: 256503
Number of successful extensions: 600
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)