Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0128
         (650 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2DE80 Cluster: Putative uncharacterized protein; n=2; ...    40   0.039
UniRef50_Q4L9A9 Cluster: Similar to unknown protein; n=1; Staphy...    36   1.1  
UniRef50_P09975 Cluster: Protein ycf2; n=2; cellular organisms|R...    34   2.6  
UniRef50_Q97RU3 Cluster: Conserved domain protein; n=5; Streptoc...    33   5.9  
UniRef50_Q1DUA6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  
UniRef50_Q99GW9 Cluster: Lef-4; n=3; Nucleopolyhedrovirus|Rep: L...    33   7.8  

>UniRef50_A2DE80 Cluster: Putative uncharacterized protein; n=2;
           Eukaryota|Rep: Putative uncharacterized protein -
           Trichomonas vaginalis G3
          Length = 1360

 Score = 40.3 bits (90), Expect = 0.039
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
 Frame = +2

Query: 23  YFQKQTITKIQ--SLFFSFLF-YYGNRLRLCQYASVEFIYSSIIMKYIHIQLFEK*TKNN 193
           Y+ K+ I   Q  S+FFSFLF ++GN+    ++A+  F YSSI+  +   Q  E    NN
Sbjct: 382 YYTKEDIPHDQEPSVFFSFLFEFFGNK-TFSRFATKCFSYSSIVYPHESQQFLEDLMMNN 440

Query: 194 EMKSSRF 214
            +  SRF
Sbjct: 441 TLTHSRF 447


>UniRef50_Q4L9A9 Cluster: Similar to unknown protein; n=1;
           Staphylococcus haemolyticus JCSC1435|Rep: Similar to
           unknown protein - Staphylococcus haemolyticus (strain
           JCSC1435)
          Length = 141

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = -1

Query: 299 PFSLEHYIHLISVQLI*LNFIPIYKYFK*IYLISFRYFSFIFQI 168
           P  LE  IH++   LI + F+ IYK+FK  Y IS+     IF I
Sbjct: 51  PLILELLIHIVIGFLIYITFLFIYKFFKPFYKISYLLLIIIFLI 94


>UniRef50_P09975 Cluster: Protein ycf2; n=2; cellular organisms|Rep:
           Protein ycf2 - Marchantia polymorpha (Liverwort)
          Length = 2136

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
 Frame = +3

Query: 165 SYLKNKRKITK*NQVDLFEIFVNWDEI*LDQLNRDKMNVMFQGKWWE--FAETFWKNVVY 338
           SY K+     K N+++  EI++  +E+  D + +    ++++GK  +    ++F  N+ Y
Sbjct: 349 SYKKDCLDFNKFNELNNSEIYIKIEELFSDYIYKFSKYILYEGKKSKTIIKQSFNNNIYY 408

Query: 339 LS-SAIINFATLVYF 380
              ++I NF T+ YF
Sbjct: 409 KKLNSIFNFNTIFYF 423


>UniRef50_Q97RU3 Cluster: Conserved domain protein; n=5;
           Streptococcus pneumoniae|Rep: Conserved domain protein -
           Streptococcus pneumoniae
          Length = 187

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 23/78 (29%), Positives = 38/78 (48%)
 Frame = -1

Query: 455 LFLFNLAFFRISSAIMVAYNRSISVKIYKCGEINYS**KINNILPKSLSKFPPFSLEHYI 276
           L LFNLAFF   S +    N+   +KI   G  + S   +  +L    + +    L  +I
Sbjct: 37  LLLFNLAFFVDLSGVQFLKNKKQFLKIMLAGIASNSILSLTGLLVLLFTSYKLLGLLFFI 96

Query: 275 HLISVQLI*LNFIPIYKY 222
             I++ +I +N IP ++Y
Sbjct: 97  --INLGMIFINSIPFFQY 112


>UniRef50_Q1DUA6 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 316

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 222 IFVNW--DEI*LDQLNRDKMNVMFQGKWWEFAETFWKNVV 335
           I VNW  D +  D+L R+ M     GK W+  E  WK+++
Sbjct: 275 ILVNWNNDTVQPDRLTREYMTSEMLGKVWDHTEATWKSIL 314


>UniRef50_Q99GW9 Cluster: Lef-4; n=3; Nucleopolyhedrovirus|Rep:
           Lef-4 - Helicoverpa armigera nucleopolyhedrovirus G4
          Length = 461

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 21  VTFKNKQSLKYNHYSSPFFFIMVIGFVCASMPVSNLFILQL**NTYIYSYLKNKR 185
           V F +   L   H SSPF    V+ F C  +P + L+I  L    +++ Y+ N +
Sbjct: 267 VIFMDDMQLFAGHLSSPFAVNNVVAFQCELLPNNRLYITDL---LHVFKYVYNNK 318


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,231,726
Number of Sequences: 1657284
Number of extensions: 11449082
Number of successful extensions: 23289
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23281
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)