Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0128
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    28   1.0  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    27   3.1  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   4.1  
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    25   9.5  

>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 249 LDQLNRDKMNVMFQGKWWEFAETFWK 326
           +D+L R  +NVM + K W F +T  K
Sbjct: 298 IDELVRQSLNVMSEAKSWTFEDTITK 323


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 424 FPVQ*WWLTTVQYL*KYTSVAKLIIADER*TTFFQKVSANSHHFPWNI 281
           F V  W    V Y      + K    D+   T ++K+ ANS+ FP N+
Sbjct: 219 FEVDLWSAGVVMYA---LLIGKPPFQDKEVKTIYRKIKANSYSFPSNV 263


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 29  QKQTITKIQSLFFSFLFYYGNRLRLCQYASV 121
           QK T +   S+F SFLF Y   +R C Y S+
Sbjct: 384 QKFTNSSATSIFVSFLFVY--YMRYCTYKSL 412


>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 297 IFLGTLHSSYLCSIDLIKFHPNLQIFQINLLDFISLF 187
           + LG     +L ++ L+ FH N  I + ++LD   +F
Sbjct: 69  LLLGKKWLLFLANLPLLVFHANQVIHKTHILDATEIF 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,671
Number of Sequences: 5004
Number of extensions: 55213
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)