Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0128
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1079 - 11223247-11223336,11223606-11223717,11224743-112248...    28   5.6  
02_04_0099 - 19728053-19728589                                         28   7.4  
02_01_0623 - 4676847-4676879,4676953-4677115,4677467-4677620,467...    28   7.4  
10_07_0017 - 11832733-11832963,11835172-11835550,11836466-11836704     27   9.8  

>12_01_1079 -
           11223247-11223336,11223606-11223717,11224743-11224825,
           11226061-11226173,11226261-11226337,11228626-11228719,
           11229072-11229160,11230485-11230560,11231637-11231808
          Length = 301

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 29  QKQTITKIQSLFFSFLFYYGNRLRLCQYASV 121
           QK  I+   S +F   FYY N++R C   SV
Sbjct: 251 QKYEISPGLSFWFLVCFYYNNQIRYCHDTSV 281


>02_04_0099 - 19728053-19728589
          Length = 178

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 3   AGIGTRVTFKNKQSLKYNHYSSPFFFIMVIGFVCASMPVSN 125
           AGI +R+++K   S   NH+ SP      +  + AS+ +SN
Sbjct: 35  AGIDSRISYKFCVSKLSNHHLSPDADTRGLALIAASLGISN 75


>02_01_0623 -
           4676847-4676879,4676953-4677115,4677467-4677620,
           4678413-4678554,4678641-4678706,4679389-4679922
          Length = 363

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 273 MNVMF-QGKWWEFAETFWKNVVYLSSAIINFAT 368
           M++ F +  WW FA+ + K++VY S  ++ ++T
Sbjct: 152 MDIKFMESVWWVFAQLWDKDLVYKSFKVMPYST 184


>10_07_0017 - 11832733-11832963,11835172-11835550,11836466-11836704
          Length = 282

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 303 PTIFLG-TLHSSYLCSIDLIKFHPNLQIFQINLL 205
           P I+LG T +  Y  SIDL K H  LQ++Q++ L
Sbjct: 103 PCIYLGRTKNGVYCASIDL-KQHQRLQVWQLHEL 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,290,091
Number of Sequences: 37544
Number of extensions: 276242
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)