Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0128
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49945-1|AAC47925.1|  414|Caenorhabditis elegans Hypothetical pr...    32   0.31 
Z70309-7|CAB54292.1|  209|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine r...    28   5.0  
AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z81073-6|CAN86904.2|  215|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z81073-5|CAE17804.3|  242|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U49945-1|AAC47925.1|  414|Caenorhabditis elegans Hypothetical
           protein C02H7.2 protein.
          Length = 414

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 14  HEGYFQKQTITKIQSLFFSFLFYYGNRLRLCQYASVEFIYSSIIMKYIHI 163
           HE Y Q ++I  I  +FF  LF+Y   ++L   A   F+     M+Y HI
Sbjct: 93  HEEYVQFKSIRNIVMIFFYDLFWYTGVVQLGLMAGNRFVSIVYPMEYKHI 142


>Z70309-7|CAB54292.1|  209|Caenorhabditis elegans Hypothetical
           protein R102.8 protein.
          Length = 209

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 329 ILPKSLSKFPPFSLEHYIH-LISVQLI*LNFIPIYKYFK*IYLISFRYFSFIFQITVY 159
           +LP+S + F P +   YIH L++++++ + FI +            ++  F+F ITVY
Sbjct: 24  VLPESNNFFNPSTYRLYIHVLLTMRILLILFITVAYVTAFPGFPKTKWDPFVFDITVY 81


>AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine
           receptor, class i protein37 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 299 PFSLEHYIHLISVQLI*LNFIPIYKY-FK*IYLISFRYFSFIFQIT 165
           PF L  Y +LI    + LN   I+   FK   + +FRY+  +FQI+
Sbjct: 7   PFWLMLYYYLIGSTSLILNLFTIFLVIFKSDKIDNFRYYLLVFQIS 52


>AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical
           protein F52G3.3 protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = -3

Query: 246 KFHPNLQIFQINLLDF---ISLFFVY--FSNNCICMYF 148
           KFHP L +FQ ++L F   + + FV+   S NC   +F
Sbjct: 400 KFHPLLFVFQHSILHFKFILKIIFVFRSISRNCGVQFF 437


>Z81073-6|CAN86904.2|  215|Caenorhabditis elegans Hypothetical
           protein F30F8.10b protein.
          Length = 215

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = -1

Query: 422 SSAIMVAYNRSISVKIYKCGEINYS**KINNILPKSLSKFPPFSLEHYIHLISVQLI*LN 243
           SS   VAY  SI+V   K   +  +   +NN++  SLS  PP+    ++H++S     L+
Sbjct: 92  SSNAHVAYILSIAVD-KKFRRLGLATRLLNNLM-SSLSDHPPYPRAVFLHVLSTNSAALS 149

Query: 242 FIPIYKY 222
           F  ++ +
Sbjct: 150 FYKMHGF 156


>Z81073-5|CAE17804.3|  242|Caenorhabditis elegans Hypothetical
           protein F30F8.10a protein.
          Length = 242

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = -1

Query: 422 SSAIMVAYNRSISVKIYKCGEINYS**KINNILPKSLSKFPPFSLEHYIHLISVQLI*LN 243
           SS   VAY  SI+V   K   +  +   +NN++  SLS  PP+    ++H++S     L+
Sbjct: 119 SSNAHVAYILSIAVD-KKFRRLGLATRLLNNLM-SSLSDHPPYPRAVFLHVLSTNSAALS 176

Query: 242 FIPIYKY 222
           F  ++ +
Sbjct: 177 FYKMHGF 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,455,181
Number of Sequences: 27780
Number of extensions: 294603
Number of successful extensions: 709
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)