Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0127
         (575 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5C0F3 Cluster: SJCHGC02924 protein; n=2; Schistosoma j...    36   0.90 
UniRef50_A5TXG9 Cluster: Putative uncharacterized protein; n=1; ...    33   3.6  
UniRef50_Q7JVS8 Cluster: AT19640p; n=4; Diptera|Rep: AT19640p - ...    33   4.8  

>UniRef50_Q5C0F3 Cluster: SJCHGC02924 protein; n=2; Schistosoma
           japonicum|Rep: SJCHGC02924 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 198

 Score = 35.5 bits (78), Expect = 0.90
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = -2

Query: 196 DTES*MQLRCTTLLIFTCATSPVCRRSNANRTQKHNYKSSIYVIILLITCSSVIKATYSS 17
           +T   + ++C++L+  TC TS +      +RT   N+ S +Y+   ++ CS ++K   S+
Sbjct: 14  ETSPKVWIKCSSLIFLTCQTSCLILLMRVSRT---NHASELYLASTVVVCSEILKLILST 70


>UniRef50_A5TXG9 Cluster: Putative uncharacterized protein; n=1;
           Fusobacterium nucleatum subsp. polymorphum ATCC
           10953|Rep: Putative uncharacterized protein -
           Fusobacterium nucleatum subsp. polymorphum ATCC 10953
          Length = 456

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 127 CRRSNANRTQKHNYKSSIYVIILLITCSSVIKATYSS 17
           C+R+N   T KH  K+S+  +IL   C  ++KA +S+
Sbjct: 165 CKRNNITYTGKHKTKNSLIELILEKQCPELLKADFST 201


>UniRef50_Q7JVS8 Cluster: AT19640p; n=4; Diptera|Rep: AT19640p -
           Drosophila melanogaster (Fruit fly)
          Length = 414

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +3

Query: 75  ILDL*LCFCVRFAFDLRQTGDVAQVNINKVVHLNCIHDSVSIRFMY*LVSEL 230
           IL   LC    F F +R+T DV +VN   + H+    DSV  RF + + S L
Sbjct: 205 ILSPILCLPTYFVFQVRETYDVDKVNSEAMYHVYFDKDSVLYRFNFWIHSVL 256


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 476,909,171
Number of Sequences: 1657284
Number of extensions: 8364265
Number of successful extensions: 15716
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15714
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)