Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0127
         (575 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118700-1|AAM50560.1|  414|Drosophila melanogaster AT19640p pro...    33   0.28 
AY099098-1|AAM28948.1|  414|Drosophila melanogaster TRH-like rec...    33   0.28 
AE013599-1212|AAF58717.1|  414|Drosophila melanogaster CG13229-P...    33   0.28 

>AY118700-1|AAM50560.1|  414|Drosophila melanogaster AT19640p
           protein.
          Length = 414

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +3

Query: 75  ILDL*LCFCVRFAFDLRQTGDVAQVNINKVVHLNCIHDSVSIRFMY*LVSEL 230
           IL   LC    F F +R+T DV +VN   + H+    DSV  RF + + S L
Sbjct: 205 ILSPILCLPTYFVFQVRETYDVDKVNSEAMYHVYFDKDSVLYRFNFWIHSVL 256


>AY099098-1|AAM28948.1|  414|Drosophila melanogaster TRH-like
           receptor protein.
          Length = 414

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +3

Query: 75  ILDL*LCFCVRFAFDLRQTGDVAQVNINKVVHLNCIHDSVSIRFMY*LVSEL 230
           IL   LC    F F +R+T DV +VN   + H+    DSV  RF + + S L
Sbjct: 205 ILSPILCLPTYFVFQVRETYDVDKVNSEAMYHVYFDKDSVLYRFNFWIHSVL 256


>AE013599-1212|AAF58717.1|  414|Drosophila melanogaster CG13229-PA
           protein.
          Length = 414

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +3

Query: 75  ILDL*LCFCVRFAFDLRQTGDVAQVNINKVVHLNCIHDSVSIRFMY*LVSEL 230
           IL   LC    F F +R+T DV +VN   + H+    DSV  RF + + S L
Sbjct: 205 ILSPILCLPTYFVFQVRETYDVDKVNSEAMYHVYFDKDSVLYRFNFWIHSVL 256


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,274,054
Number of Sequences: 53049
Number of extensions: 382217
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2276053890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)