Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0127
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17500.1 68416.m02235 F-box family protein contains Pfam prof...    27   6.8  

>At3g17500.1 68416.m02235 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 438

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/62 (27%), Positives = 24/62 (38%)
 Frame = +2

Query: 275 STVVFTDGPL*LLNHTSD*LETWYPCRKCMYLMDRLIFISVLDSLIIMTINNNVNYNYSA 454
           S +   DG L L     D LE W PC      +   I        ++  +NNN  ++Y  
Sbjct: 94  SGIFHCDGLL-LCTTKDDRLEVWNPCTGQTRRVQHSIHYKTNSEFVLGYVNNNSRHSYKI 152

Query: 455 KR 460
            R
Sbjct: 153 LR 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,255,941
Number of Sequences: 28952
Number of extensions: 180758
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)