Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0125
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    27   2.0  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    27   2.7  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    27   3.5  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   4.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   8.2  

>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 409 FSSPNMKVFDVVLNGDHTIVADLDIFDKVGRGVAH 513
           + +P  +    +  GDHT    L++FD VG+ + H
Sbjct: 502 YDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMH 536


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = +1

Query: 139 TGLGEIIYAINAGGPAHT----DIYGIHYEK-DPLQGRIGTASDYGKQLVMIGRVNPKDE 303
           TG G  ++A+  G P H     +   + ++K   +  +  T   YG  +V IG +  KD+
Sbjct: 205 TGPGMFVHALQNGKPHHLASSWEFALLQHKKFTAIMMQFKTPPSYGSTIVNIGGIAMKDK 264

Query: 304 ILYQT 318
           I+  T
Sbjct: 265 IISAT 269


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 325 YHHSTFGYDIPANKDGDYVLVLKFSEVYFSSPNMKVFDVVLNG 453
           YH     + +P +KD D  LV  +++ YFSS N      VL G
Sbjct: 173 YHKHYSRWYLPFDKDDDNQLVEAYAK-YFSSENRPSIFYVLQG 214


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 493 VGRGVAHDEYIPYTIKNGKLYYNEEESDIRGGKI 594
           V +   +D  I   + NG+L Y E   D+ GG++
Sbjct: 569 VVQSAINDMQIVVALSNGELVYFEMSDDVEGGQL 602


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 491 LSKISKSATIVWSPFKTTSNTFMFGELKYT 402
           L  ISK+AT+ WSP     N  +     YT
Sbjct: 3   LKDISKTATLAWSPRGVNDNQALLALGGYT 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,353
Number of Sequences: 5004
Number of extensions: 66491
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)