Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0125
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3961| Best HMM Match : No HMM Matches (HMM E-Value=.)               82   5e-16
SB_6593| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.076
SB_54781| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_3961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 37/74 (50%), Positives = 52/74 (70%)
 Frame = +1

Query: 430 VFDVVLNGDHTIVADLDIFDKVGRGVAHDEYIPYTIKNGKLYYNEEESDIRGGKIKVEFI 609
           VFDV +N  H ++  LDI++KVGRG+AHDEY+P+TI++ +L +N        G + VEFI
Sbjct: 2   VFDVSINS-HPVIQGLDIYEKVGRGIAHDEYVPFTIRDNQLIHNGNTMPFT-GTVYVEFI 59

Query: 610 KGYRDNPKINLYML 651
           KG  DNPKIN  ++
Sbjct: 60  KGVYDNPKINAMLI 73



 Score = 36.3 bits (80), Expect = 0.025
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +3

Query: 627 PKDKSLYVMTGTIDEVPKLPPLVWPENETE 716
           PK  ++ +M GT+++VPKLP L  P++E E
Sbjct: 66  PKINAMLIMKGTLEDVPKLPALPGPQDEEE 95


>SB_6593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
 Frame = -3

Query: 528 RYIFIMSNTSSYFIKNIQI-GYYSMVSIQDDIKYFHVWGTEIHFTEL*N*NIVAVFVCRN 352
           R++FI S +  Y +KN+++  Y+S++++ + I Y  ++  ++HFT     N V +F C  
Sbjct: 74  RHLFINSESGQY-VKNVELPSYFSILAVDEVINY--LYSGKLHFTPT---NTVDIFKCAL 127

Query: 351 VVAERAVVIPFS-LIKYFIFRINSADHNQLFTII*CSANSSL*WIFFIMNTVDVCMSR 181
            +   A+V   + +++ F+  +    +  L             W F      DVC ++
Sbjct: 128 HIELDALVKECAFVLERFLTPVTCLTYRALAVTYGLRQLKHRCWRFLCQRFSDVCSTQ 185


>SB_54781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 589 FLPEYQILLHYSRVSRSLWCKVYIHHEQHLFLLYQKY 479
           F+P   ++ +YSR+ RSLW   +   E H  +   +Y
Sbjct: 187 FIPSTLLVFYYSRIVRSLWFAEHPSQEAHAQMAALRY 223


>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1950

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +1

Query: 478 DIFDKVGRGVAHDEYIPYTIKNGKLYYNEEESDIRGGKI----KVEFIKGYRD 624
           + FD  G GV H+   PY     +L Y++E   +   K+    KV+ I  Y +
Sbjct: 555 EYFDNFGIGVPHEVERPYNPLEKQLVYDKETGQVTDWKVTPLNKVDEIAAYHN 607


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,552,659
Number of Sequences: 59808
Number of extensions: 464913
Number of successful extensions: 856
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)