Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0125
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23646-2|AAK67235.1|  304|Caenorhabditis elegans Hypothetical pr...   140   7e-34
U58753-6|AAC24440.1|  705|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U51999-3|AAA96084.1|  306|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    29   2.5  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    29   2.5  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    29   2.5  
Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF016451-12|AAB65994.1|  317|Caenorhabditis elegans Hypothetical...    28   5.8  
Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical pr...    28   7.7  
L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>L23646-2|AAK67235.1|  304|Caenorhabditis elegans Hypothetical
           protein F44E2.10 protein.
          Length = 304

 Score =  140 bits (340), Expect = 7e-34
 Identities = 74/187 (39%), Positives = 104/187 (55%), Gaps = 1/187 (0%)
 Frame = +1

Query: 94  LIRIFISLLCVIKTATGLGEIIYAINAGGPAHTDIYGIHYEKDPLQGRIGTASDYGKQLV 273
           LI   I ++   KT      ++ A+N GGP     YGI Y  D  +   G +SD+G Q  
Sbjct: 23  LISFLIVVVSSAKTVNLKNRVVAAVNCGGPDALGAYGIEYSADTSED--GVSSDHGMQY- 79

Query: 274 MIGRVNPKDEILYQTERYHHSTFGYDIPANKDGDYVLVLKFSEVYFSSPNMKVFDVVLNG 453
                   D  +YQTER+   +F YD+P ++DG+YV++LKFSEVYF     K+F++ +N 
Sbjct: 80  SFNNAEVDDMEIYQTERWSKESFSYDVPISEDGEYVIILKFSEVYFQKAGEKIFNIRIN- 138

Query: 454 DHTIVADLDIFDKV-GRGVAHDEYIPYTIKNGKLYYNEEESDIRGGKIKVEFIKGYRDNP 630
            H  V +LDIFD   GRG AHD YIP  IK   +  +    + + GK+ +E  KG  DNP
Sbjct: 139 SHLAVKNLDIFDAAGGRGFAHDVYIPVVIKGSSISVSGHSREYK-GKVIIELSKGPHDNP 197

Query: 631 KINLYML 651
           K+N Y +
Sbjct: 198 KLNGYAI 204


>U58753-6|AAC24440.1|  705|Caenorhabditis elegans Hypothetical
           protein W03B1.8 protein.
          Length = 705

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = -3

Query: 642 EIYLWVIPISFDKFNFNFS-SPNIRFFFIIVEFPVLYGVRYIFIMSNTSSYFIKNIQIGY 466
           E Y   + I+ D F   +S S  I+F+F+         V +IFI+S   +YF + +Q GY
Sbjct: 128 EDYFQQLSIAIDIFTHTWSLSVEIQFYFL---------VPFIFIIS---TYFSEILQYGY 175

Query: 465 YSMVSIQDDIKYFHVWGTE 409
           + +++I   + +  ++ TE
Sbjct: 176 FCVIAITSLVYFNVIFSTE 194


>U51999-3|AAA96084.1|  306|Caenorhabditis elegans Hypothetical
           protein C43H6.7 protein.
          Length = 306

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 567 FFIIVEFPVLYGVRYIFIMSNTSS-YFIKNIQIGYYSMVSI 448
           FFII+ +  LY   ++ ++  T   YF+ NIQ  YY   +I
Sbjct: 51  FFIIIPYEQLYKPAWLLLLLGTCGLYFLFNIQYHYYKARTI 91


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein
             K07E12.1b protein.
          Length = 12268

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/69 (31%), Positives = 29/69 (42%)
 Frame = +1

Query: 343   GYDIPANKDGDYVLVLKFSEVYFSSPNMKVFDVVLNGDHTIVADLDIFDKVGRGVAHDEY 522
             G  +P N  G +VLVL  + V  S P  +V   + N D T++      D  G  V  D  
Sbjct: 10504 GTPLPTNDSGHFVLVLPGATVNDSKPTDEVIVSITNPDGTLLGT----DSTGAFVTEDGP 10559

Query: 523   IPYTIKNGK 549
             I      GK
Sbjct: 10560 IIENDDEGK 10568


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/69 (31%), Positives = 29/69 (42%)
 Frame = +1

Query: 343   GYDIPANKDGDYVLVLKFSEVYFSSPNMKVFDVVLNGDHTIVADLDIFDKVGRGVAHDEY 522
             G  +P N  G +VLVL  + V  S P  +V   + N D T++      D  G  V  D  
Sbjct: 10549 GTPLPTNDSGHFVLVLPGATVNDSKPTDEVIVSITNPDGTLLGT----DSTGAFVTEDGP 10604

Query: 523   IPYTIKNGK 549
             I      GK
Sbjct: 10605 IIENDDEGK 10613


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/69 (31%), Positives = 29/69 (42%)
 Frame = +1

Query: 343   GYDIPANKDGDYVLVLKFSEVYFSSPNMKVFDVVLNGDHTIVADLDIFDKVGRGVAHDEY 522
             G  +P N  G +VLVL  + V  S P  +V   + N D T++      D  G  V  D  
Sbjct: 10549 GTPLPTNDSGHFVLVLPGATVNDSKPTDEVIVSITNPDGTLLGT----DSTGAFVTEDGP 10604

Query: 523   IPYTIKNGK 549
             I      GK
Sbjct: 10605 IIENDDEGK 10613


>Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical
           protein W04D2.2a protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 639 IYLWVIPISFDKFNFNFSSPNIRFFFIIVEFPVLY 535
           +YL ++ I F+K NF  S   I +   I++F + Y
Sbjct: 46  LYLPILSIIFEKDNFKMSCFKIMYLLGIIDFMITY 80


>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
           protein Y38C9A.1 protein.
          Length = 1484

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/49 (24%), Positives = 29/49 (59%)
 Frame = +2

Query: 173 PEVLLIQTSTVFIMKKIHYRDELALHQIMVNNWL*SAELILKMKYFIKL 319
           P+ +  +  T F   ++HY+   A+++ ++NN L S +++ K+   +K+
Sbjct: 739 PQKVQTKKQTNFEPLEVHYQAFSAVYKYLINNELPSLKILRKLHVLLKI 787


>AF016451-12|AAB65994.1|  317|Caenorhabditis elegans Hypothetical
           protein C03A7.13 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 85  MSRLIRIFISLLCVIKTATGLGEIIYAINAGGPAHTD 195
           M R   +FI  L ++ T      +++ INA G +H D
Sbjct: 1   MKRTSILFILFLSLVSTLVNTSNVVFFINAIGKSHLD 37


>Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical
           protein T27D1.3 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 592 FFLPEYQILLHYSRVSRSLWCK 527
           +F+P + I + Y++V++ LWCK
Sbjct: 204 YFVPCFIITVVYTKVAKCLWCK 225


>L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical
           protein R05D3.2 protein.
          Length = 737

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 31  HTITRFKASKLYNNRLNNMSRLIRIFISL 117
           HT+   K+SKLY   +    RL+++F+SL
Sbjct: 517 HTV---KSSKLYKRAIEKQGRLVKLFMSL 542


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,392,462
Number of Sequences: 27780
Number of extensions: 362336
Number of successful extensions: 888
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)