Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0121
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0849 - 25344261-25344416,25344652-25344808,25344917-253450...    29   2.5  
01_06_0479 + 29631435-29631608,29632769-29632864,29633065-296331...    29   4.3  
04_03_0094 - 11113279-11114469                                         28   5.7  
03_06_0704 + 35641774-35642031,35642122-35642446,35642546-356426...    28   7.6  

>06_03_0849 -
           25344261-25344416,25344652-25344808,25344917-25345056,
           25345160-25345295,25345392-25345663,25345809-25346068,
           25346716-25347035,25347287-25347352,25347439-25347510,
           25347609-25347680,25347776-25347858,25348068-25348139,
           25348389-25348485,25348918-25349050,25349158-25349236
          Length = 704

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 542 QFLHDVKLGPKVHRHFLRVELLLGGEMCSHL 634
           ++LH+V L P VHR+     +LL  E   HL
Sbjct: 509 EYLHEVCLPPVVHRNLKSANILLDKEYSPHL 539


>01_06_0479 +
           29631435-29631608,29632769-29632864,29633065-29633106,
           29633220-29633306,29635246-29635272,29635536-29635916
          Length = 268

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 466 PRPVASAAPLAPRPPHTDTDSFSR 395
           PRP AS  P APRP  +D  + +R
Sbjct: 43  PRPAASLRPAAPRPSSSDARARTR 66


>04_03_0094 - 11113279-11114469
          Length = 396

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +3

Query: 504 RVDAHCTLITHHHSFFTMSNLDLRSI---GTFLGSNFFLAARCARISAAVI 647
           R+D+   +  HH S   +    LR++   G   G NFF  A C  + A  I
Sbjct: 231 RLDSFAMICCHHASHVVLQAERLRTLRYKGGLPGENFFSIANCGDVLAMTI 281


>03_06_0704 +
           35641774-35642031,35642122-35642446,35642546-35642699,
           35643662-35643706,35644121-35644180,35644532-35644694,
           35645356-35645717,35645985-35646303
          Length = 561

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 469 WPRPVASAAPLAPRPPHTDTDS 404
           WPRP AS A  A +PP + + +
Sbjct: 22  WPRPAASNASSASKPPQSSSSA 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,030,691
Number of Sequences: 37544
Number of extensions: 244966
Number of successful extensions: 767
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)