Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0121
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9834| Best HMM Match : CXCXC (HMM E-Value=4.4)                      31   1.1  
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_9834| Best HMM Match : CXCXC (HMM E-Value=4.4)
          Length = 247

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 466 ATARPGTTSNNTAESMHTAHSSRTITVSSRCQ 561
           +T   G+TSN+   +  TA S+ T T SS CQ
Sbjct: 111 STTTSGSTSNSAVSTTSTAGSNTTTTPSSECQ 142


>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 651 CR*PRPRCEHISPPRRSSTLRKCRWTLGPSLTS*RNC 541
           CR     C +   PRR  TLR CR+TL P   + R C
Sbjct: 296 CRYTLRPCRYTLRPRRY-TLRPCRYTLRPCRYTLRPC 331


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,857,988
Number of Sequences: 59808
Number of extensions: 300096
Number of successful extensions: 1100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)