Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0121
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22130.1 68417.m03199 protein kinase family protein contains ...    29   3.6  
At3g46590.1 68416.m05057 telomere repeat-binding protein, putati...    28   4.8  
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr...    28   4.8  

>At4g22130.1 68417.m03199 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 338

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 542 QFLHDVKLGPKVHRHFLRVELLLGGEMCSHL 634
           ++LH+V L   VHR+F    +LL  E+  HL
Sbjct: 144 EYLHEVCLPSIVHRNFKSANILLDEELNPHL 174


>At3g46590.1 68416.m05057 telomere repeat-binding protein, putative
           similar to telomere repeat-binding protein TRP1
           [Arabidopsis thaliana] gi|5459298|emb|CAB50690
          Length = 552

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 460 PVASAAPLAPRPPH 419
           PVASAA LAPRPP+
Sbjct: 422 PVASAAMLAPRPPN 435


>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
           protein kinase family protein contains leucine
           rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to leucine-rich
           repeat transmembrane protein kinase 2 [Zea mays]
           gi|3360291|gb|AAC27895
          Length = 768

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 542 QFLHDVKLGPKVHRHFLRVELLLGGEM 622
           QFLH+V   P VH++F   ++LL G++
Sbjct: 611 QFLHEVCQPPVVHQNFKSSKVLLDGKL 637


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,335,986
Number of Sequences: 28952
Number of extensions: 194605
Number of successful extensions: 493
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)