Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0117
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   4.0  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   5.2  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   6.9  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   6.9  
SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   9.1  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    24   9.1  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +1

Query: 157  KLHYRSIILKTNNINLFSIRPQTLNNNKSFPIDSKQRIYFYVCVVS 294
            K+++  + L+   ++L  +R + +NN     + S     F+V V+S
Sbjct: 2662 KVYFEVLNLQPTEMHLSFVRTERINNTDGTVVSSHNPFVFFVNVLS 2707


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 220  QTLNNNKSFPIDSKQRIYFYVCVVSNKW 303
            Q    N   P+DSKQ + +    +S KW
Sbjct: 1129 QQQQTNYEIPLDSKQGVLYLRITLSPKW 1156


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 8/33 (24%), Positives = 14/33 (42%)
 Frame = +1

Query: 154 PKLHYRSIILKTNNINLFSIRPQTLNNNKSFPI 252
           P + Y  +       N    RP+  + NK +P+
Sbjct: 525 PSVEYGKLTFNDTTFNFMERRPRNFDVNKKYPV 557


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 322 ENITHTTIYLTQHIHKN 272
           ENI  TTI L Q++H N
Sbjct: 736 ENIQGTTIQLLQYVHDN 752


>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 93  FIISINYSRISNTAGPLVLLKSPKLNIQ 10
           FI++I+ S + NT+G   LL+S   +I+
Sbjct: 39  FILTIDRSIVENTSGRSTLLRSVSRSIK 66


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 126 IVFDNRTIMCEFIISINYSRISN 58
           +V  N  + C +++S +YS ISN
Sbjct: 881 LVNPNTKVFCLYLVSFSYSIISN 903


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,024
Number of Sequences: 5004
Number of extensions: 34564
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)