Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0117
         (443 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)                    28   3.0  
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.0  
SB_50732| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  

>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1805

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 319 NITHTTIYLTQHIHKNIFFVYCQLGSFCYCLKSVVE 212
           NIT+ TI   Q++H+++   YC  GS C+ L   VE
Sbjct: 22  NITNATIIQKQNLHRHLNRHYC--GSNCHLLLVKVE 55


>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 272 IFMYVLCQINGSVCNVFFIDLKYLLC 349
           IFM+VL  I G V   +F+  K+LLC
Sbjct: 660 IFMFVLAVITGMVIGKYFVH-KFLLC 684



 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 272 IFMYVLCQINGSVCNVFFIDLKYLLC 349
           IFM+VL  I G V   +F+  K+LLC
Sbjct: 622 IFMFVLAFITGMVIGKYFVH-KFLLC 646


>SB_50732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +3

Query: 354 FEKNISIVHSFSISVR--NFILLRPRN 428
           F+ N ++ H FSISVR  +F+LL P N
Sbjct: 24  FDDNDTLSHHFSISVRVSSFLLLWPPN 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,462,974
Number of Sequences: 59808
Number of extensions: 224792
Number of successful extensions: 398
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)