Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0117
         (443 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory recep...    29   1.5  
U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant respons...    29   1.5  
AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z81592-9|CAB63315.1|  945|Caenorhabditis elegans Hypothetical pr...    27   6.1  

>U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory receptor
           Odr-10 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +1

Query: 205 FSIRPQTLNNNKSFPIDSKQRIYFYVCV--VSNKW*CV*CFLY*FKVSFMHYLKKILALC 378
           F +RP     N +F + S++R  +   +  +++ + C  CF   F VS +H++ +  A C
Sbjct: 61  FILRPIMHIENTTFFLISRKRFNYSTKLGKINSAFYCA-CFATSFVVSGVHFVYRYFATC 119

Query: 379 TPSL 390
            P+L
Sbjct: 120 KPNL 123


>U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant response
           abnormal protein10 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +1

Query: 205 FSIRPQTLNNNKSFPIDSKQRIYFYVCV--VSNKW*CV*CFLY*FKVSFMHYLKKILALC 378
           F +RP     N +F + S++R  +   +  +++ + C  CF   F VS +H++ +  A C
Sbjct: 61  FILRPIMHIENTTFFLISRKRFNYSTKLGKINSAFYCA-CFATSFVVSGVHFVYRYFATC 119

Query: 379 TPSL 390
            P+L
Sbjct: 120 KPNL 123


>AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical
           protein M151.3 protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 88  YKFTHYGSIVKHYDISILSQYSPKLHYRSIILKTNNINLFSIRPQ 222
           +  TH  +  KHY   + S+ +PK  Y    L+ +  +L ++R Q
Sbjct: 25  FNLTHCATSYKHYAFQLASKIAPK-RYNDAFLEHSEEHLNALRKQ 68


>Z81592-9|CAB63315.1|  945|Caenorhabditis elegans Hypothetical
           protein T16G1.9 protein.
          Length = 945

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 202 LFSIRPQTLNNNKSFPIDSKQRIYFYVCVVSN 297
           L SI+P +  N + FP D K ++YF  C  +N
Sbjct: 279 LISIKPHSARNFE-FPKDGKLKVYFDDCSSAN 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,777,485
Number of Sequences: 27780
Number of extensions: 186885
Number of successful extensions: 360
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)