Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0117
         (443 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   4.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 128  TFRYYHSIRQNCTI 169
            T+ Y+H++ ++CTI
Sbjct: 1676 TWGYHHNVNKHCTI 1689



 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 76  IN*NYKFTHYGSIVKHYDISILSQYSPKL 162
           I+ NY    +G +   +D S+  +Y P L
Sbjct: 586 IHNNYPVHTFGRLTSKHDNSLYDEYIPFL 614


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 221 CGRIENRLILFVFNIIDL*CSFG 153
           CG    + +LF+FN +   C  G
Sbjct: 3   CGMGMIKYLLFIFNFVFAVCGLG 25


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 164 CSFGEYCDNI 135
           C+FG Y DN+
Sbjct: 620 CAFGRYVDNL 629


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 113 LSNTMTFRYYHSIRQNCTID 172
           L+  M   YY    QNCT++
Sbjct: 159 LACMMDLHYYPLDSQNCTVE 178


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 345 KRYFKSIKKTLHTLPFI*HN 286
           K+Y   ++K LH + FI H+
Sbjct: 445 KKYPFELEKALHNVMFIQHH 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,340
Number of Sequences: 438
Number of extensions: 2483
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)