Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0117
(443 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55240.1 68414.m06309 expressed protein contains Pfam profile... 31 0.26
At2g11490.1 68415.m01236 hypothetical protein 29 1.4
At1g55230.1 68414.m06308 hypothetical protein contains Pfam prof... 29 1.4
At1g35090.1 68414.m04349 hypothetical protein includes At2g10370... 29 1.9
At5g36050.1 68418.m04343 hypothetical protein includes At2g10370... 28 2.5
At4g19300.1 68417.m02844 hypothetical protein includes At2g10370... 28 2.5
At4g07690.1 68417.m01209 hypothetical protein includes At2g24900... 27 5.7
At2g27480.1 68415.m03321 calcium-binding EF hand family protein ... 27 5.7
At1g15240.1 68414.m01824 phox (PX) domain-containing protein wea... 26 10.0
>At1g55240.1 68414.m06309 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 311
Score = 31.5 bits (68), Expect = 0.26
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 190 NNINLFSIRPQTLNNNKSFPIDSKQRIYFYVCVVSN 297
NNI LF + P T +++ FPI + + Y+ ++S+
Sbjct: 24 NNIKLFCLHPNTFSSSTWFPISKLRHLELYLIMLSS 59
>At2g11490.1 68415.m01236 hypothetical protein
Length = 168
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 8 ICILSLGDFKSTSGPAVFEIRL*LIEIINSHIMVLLSNTMTFRYYHSIRQN 160
IC++ + +K FE+RL L++ + + I + + YY I++N
Sbjct: 19 ICVMVVRVYKKILNHDAFELRLLLVDKLGTQIEATIGPRFSAFYYDRIKEN 69
>At1g55230.1 68414.m06308 hypothetical protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 300
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 190 NNINLFSIRPQTLNNNKSFPIDSKQRIYFYVCVV 291
NNI LF + P T ++ FP + + Y+ +V
Sbjct: 24 NNIKLFCLNPNTFTSSPWFPTSKLRHLELYIIMV 57
>At1g35090.1 68414.m04349 hypothetical protein includes At2g10370,
At5g36050, At1g35090, At1g44860, At4g19300, At1g42400,
At3g43040, At3g42500
Length = 244
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 8 ICILSLGDFKSTSGPAVFEIRL*LIEIINSHIMVLLSNTMTFRYYHSIRQN 160
IC++ L +K P FE+RL L + + I + + Y+ I++N
Sbjct: 19 ICVMVLRIYKKILNPNAFELRLVLADEWGTQIEATIGPRFSAFYFDRIKEN 69
>At5g36050.1 68418.m04343 hypothetical protein includes At2g10370,
At5g36050, At1g35090, At1g44860, At4g19300, At1g42400,
At3g43040, At3g42500
Length = 252
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 8 ICILSLGDFKSTSGPAVFEIRL*LIEIINSHIMVLLSNTMTFRYYHSIRQN 160
IC++ L +K P FE+RL L + + I + + Y+ I++N
Sbjct: 19 ICVMVLRIYKKFLNPNAFELRLVLADEWGTQIEATIGPRFSAFYFDRIKEN 69
>At4g19300.1 68417.m02844 hypothetical protein includes At2g10370,
At5g36050, At1g35090, At1g44860, At4g19300, At1g42400,
At3g43040, At3g42500
Length = 252
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 8 ICILSLGDFKSTSGPAVFEIRL*LIEIINSHIMVLLSNTMTFRYYHSIRQN 160
IC++ L +K P FE+RL L + + I + + Y+ I++N
Sbjct: 19 ICVMVLRIYKKFLNPNAFELRLVLADEWGTQIEATIGPRFSAFYFDRIKEN 69
>At4g07690.1 68417.m01209 hypothetical protein includes At2g24900,
At5g35040, At3g30500, At4g07690
Length = 248
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 8 ICILSLGDFKSTSGPAVFEIRL*LIEIINSHIMVLLSNTMTFRYYHSIRQN 160
IC++ L + S FE+R+ +E I ++ + + RYY + +N
Sbjct: 18 ICVMVLRKYVSFFTDNSFELRVVFVEEWGIQIEAIIGSRFSQRYYDMLEEN 68
>At2g27480.1 68415.m03321 calcium-binding EF hand family protein
similar to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 186
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 322 ENITHTTIYLTQHIHKNIFFVYCQLGSFCYCLKSVVEL 209
+ I++ TI L I+K +LG F YC K VEL
Sbjct: 40 DGISNRTIRLLLFIYKIPVDSLLRLGKFTYCPKEYVEL 77
>At1g15240.1 68414.m01824 phox (PX) domain-containing protein weak
similarity to SP|Q9Y5W8 Sorting nexin 13 {Homo sapiens};
contains Pfam profiles PF00787: PX domain, PF02194: PXA
domain
Length = 706
Score = 26.2 bits (55), Expect = 10.0
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -1
Query: 227 KVCGRIENRLILFVFNIIDL*CSFGEYCDNIEMS*CLTIEP 105
KV I N LIL F DL C+F Y E+ C I P
Sbjct: 228 KVLQHIVNSLILVTFRPEDLHCAFFHYTVR-ELFACCVIRP 267
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,688,128
Number of Sequences: 28952
Number of extensions: 155435
Number of successful extensions: 239
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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