Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0116
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013) 51 8e-07
SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_39378| Best HMM Match : VWA (HMM E-Value=0) 32 0.51
SB_25198| Best HMM Match : Tropomyosin (HMM E-Value=1.5e-08) 30 1.6
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 30 2.1
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1) 29 3.6
SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40) 29 4.8
SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08) 29 4.8
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_31228| Best HMM Match : EMP24_GP25L (HMM E-Value=0.22) 29 4.8
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 6.3
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3) 28 6.3
SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07) 28 6.3
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_30893| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_44710| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_11762| Best HMM Match : 4HBT (HMM E-Value=1.6e-19) 28 8.3
>SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013)
Length = 185
Score = 51.2 bits (117), Expect = 8e-07
Identities = 30/83 (36%), Positives = 41/83 (49%)
Frame = +1
Query: 241 GVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEAT 420
G G F GLA YL S EI ++ E Y + Y K G +A LD +
Sbjct: 69 GSLGQLMFFGGLAAYLLSNEILIIHEETYIAAVMGGTFYWLMKKAGGPIAEMLDNTSQEI 128
Query: 421 ENEWNEGRNQTVKALEDAIEGEK 489
+ +N GRN ++K L+DAI+ EK
Sbjct: 129 LDAFNVGRNASIKHLQDAIDNEK 151
>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -1
Query: 321 FVLHYIDFLAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFA 181
+VL+ IDF A C HT + H +F+VE F R KS F+
Sbjct: 21 YVLNSIDFEA----CDKHTIGIAYAHAAFKVEAATKFTREPLKSGFS 63
>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
Length = 2865
Score = 31.9 bits (69), Expect = 0.51
Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 2/167 (1%)
Frame = +1
Query: 196 GFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKF 375
GF+ E++F SK+ +G+A+Y S I+ + Y +G + +
Sbjct: 2183 GFLREKYFVIGISKSFEISANKTRIGVASYSSSANIHFNFNTYNTGYDVENAINAISFSG 2242
Query: 376 GPK--LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENV 549
G K LA LD E N + + + + AL +G T++ Q L+ +K
Sbjct: 2243 GAKRNLARGLDATFEGLFN-FTDIQPSDINALIVLTDGRATDEIDMAAQRLV--NEKNVT 2299
Query: 550 LLQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVS 690
++ + A RL +E++R E + RR+ Q ++ +++
Sbjct: 2300 IIAVGAGSHVRL----AELRRLAGLASESPLITRRVIQADSMEELIN 2342
>SB_25198| Best HMM Match : Tropomyosin (HMM E-Value=1.5e-08)
Length = 277
Score = 30.3 bits (65), Expect = 1.6
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Frame = +1
Query: 397 LDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYR 576
L K +E T+ E +E + ALE+AIE +K+ + EL I+ + + +E R
Sbjct: 90 LCKTLEVTDRESDEKMRELEDALEEAIELDKSTADKLAEVELKIKVVQGELEKAVERGDR 149
Query: 577 ERLMYAY--------SEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNV 696
+M + SEV R L+ + + + ER + + +++I N+
Sbjct: 150 AEMMCEHLMNDFTGTSEVLRDLEVK-DAAASEREIDNEDKIEFIQENL 196
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = +3
Query: 486 EDGAVARAGTGAPHPGQEGERAPAARGRLQGE-AHVRLLRGEAASGLPAREVERGAPSRP 662
E GA R G PG +GER P QGE H + A G+P + G P
Sbjct: 422 EPGAPGRDGA----PGAQGERGPRGEQGKQGEKGHAGEGGADGAPGIPGEQGPMGPVGAP 477
Query: 663 EAHGRLDS 686
G S
Sbjct: 478 GPVGNAGS 485
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Frame = +1
Query: 397 LDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQ--GQELLIQAKKENV-----LL 555
L++E+E+ + E E R + VKA E E+ EQ++A+ ++ IQA + + L
Sbjct: 1543 LEEEIESKDAEAEEERTRIVKAAE-GFALEREEQFKAELADKDDCIQATENELNQVKHQL 1601
Query: 556 QLEAAYRERLMYAYSEVKRRLDYQLE 633
QL ++ L+ A E R L++ E
Sbjct: 1602 QLAQEAKKTLLEASDERDRELEHLKE 1627
>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = +3
Query: 27 YKIYDK*CVARGFAFRCEQTDRVHSTSRTGLRLRCSNTRPENLCSPCKG*ARQS*TWLYS 206
Y I + + G+ R + ++ G+R +C N ++C C+ R + T +
Sbjct: 93 YCIAEDQAIKEGYIHRGITCNTCQASPICGVRYKCGNCVDYDICERCESQDRHNSTHAFI 152
Query: 207 *RMVPILPLEN 239
+PI PL N
Sbjct: 153 KIRIPIPPLAN 163
>SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 29.5 bits (63), Expect = 2.7
Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Frame = +3
Query: 483 REDGAVARAGT-GA--PHPGQEGERAPAARG-RLQGEAH-------VRLLRGEAASGLPA 629
RE A R+GT GA +PG+ G+RA RG R QG A VR R SG P
Sbjct: 325 REPRASRRSGTHGARCENPGRRGDRAHRERGARTQGVAEIGHAWSAVREPRASRRSGTPH 384
Query: 630 REVERGA 650
+E GA
Sbjct: 385 WNLEGGA 391
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/68 (26%), Positives = 25/68 (36%)
Frame = +3
Query: 468 GRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERG 647
GRN GR R+G R+ GR++ AH + G L R +G
Sbjct: 1767 GRNSGRMKSLAHRSGRNGGRMKSLANRSGRNGGRMKSLAHRSMRNGGRMKSLAHRSSRKG 1826
Query: 648 APSRPEAH 671
+ AH
Sbjct: 1827 GRMKSLAH 1834
>SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 477 RGREDGAVARAGTGAPHPGQEGERAPAARG 566
RG E AGT A H G G APA G
Sbjct: 204 RGYEQKTPESAGTSARHSGASGREAPAEAG 233
>SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)
Length = 444
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 69 FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 161
+RC TD H T T +R T P+ LC+
Sbjct: 2 YRCHTTDCAHCTDFTRQTVRTVQTPPDRLCA 32
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 69 FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 161
+R QTD H T T LR T P+ LC+
Sbjct: 194 YRHHQTDCAHCTDFTRQTLRIVQTPPDRLCA 224
>SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40)
Length = 351
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -2
Query: 389 ANFGPNFT*ATYTMTSSDSPE*YS 318
ANFGP FT T+T TS D+ E +S
Sbjct: 89 ANFGPGFT--TFTYTSGDARETFS 110
>SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)
Length = 889
Score = 28.7 bits (61), Expect = 4.8
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +1
Query: 427 EWNEGRNQTVKALEDAIEGEKTE--QWRAQGQELLIQAKKENVLLQLEAAYRERLMYAYS 600
EW + L D ++ TE + +AQ ELL+Q +K +++E RE+L
Sbjct: 176 EWGRAATKWDSTL-DQVDSVMTELSKVKAQRDELLLQIEKSEDSIKMEIDSREKL----- 229
Query: 601 EVKRRLDYQLEKSNVERRLAQKHMVD 678
L+ QL+K+ E AQ+ ++
Sbjct: 230 -----LEQQLQKTQTELAKAQQRCLE 250
>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 28.7 bits (61), Expect = 4.8
Identities = 27/95 (28%), Positives = 42/95 (44%)
Frame = +1
Query: 382 KLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQL 561
KL+ L KE TE NE + KALE I + + ++G +QAK ++ L
Sbjct: 501 KLSISLKKEFSVTEE--NERLLREKKALESRILDAEEQVSSSKGMITALQAKLDDALNSR 558
Query: 562 EAAYRERLMYAYSEVKRRLDYQLEKSNVERRLAQK 666
EA Y ++ D + +VE LA++
Sbjct: 559 EAKSDWDSNRIYELEEKIKDLSKKLKDVESDLAER 593
>SB_31228| Best HMM Match : EMP24_GP25L (HMM E-Value=0.22)
Length = 350
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/73 (19%), Positives = 35/73 (47%)
Frame = +1
Query: 364 HVKFGPKLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKE 543
H + P+L W++ + + E + + + + +A E + E+ R Q +E + +E
Sbjct: 61 HRECSPELKPWMEAQQKEMEEKLRLKKEEEERIQREAEEAAERERLRIQAEEEARRKAEE 120
Query: 544 NVLLQLEAAYRER 582
+++E R++
Sbjct: 121 EERIRIEEIKRQQ 133
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/93 (25%), Positives = 43/93 (46%)
Frame = +1
Query: 400 DKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRE 579
+KEVE NE + + KALE A G+K E+ + + ++ +E LQ + R
Sbjct: 2190 EKEVEMLSRV-NELQEELAKALESAEAGKKAEKQLKEQESEHVELSREKEALQKQLYDRL 2248
Query: 580 RLMYAYSEVKRRLDYQLEKSNVERRLAQKHMVD 678
+ + E R + E S ++ A K +++
Sbjct: 2249 TEISSLKEELSRNKHS-ETSKLDEAEAAKALLE 2280
>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
Length = 769
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 504 RAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGL 623
R+ G PGQ+GE P+ GR G ++ + SG+
Sbjct: 429 RSTRGTALPGQDGEDRPSGEGRQSGGPGIQAVWEAGTSGV 468
>SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)
Length = 750
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 469 DAIEGEKTEQWRAQGQELLIQAKKENVL 552
D + + +QW EL ++ KKENVL
Sbjct: 238 DVVLADLDQQWMLDSAELCLEEKKENVL 265
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 504 RAGTGAPHPGQEGERAPAARGRLQGEAHVRLLRGEAASGL 623
R+ G PGQ+GE P+ GR G ++ + SG+
Sbjct: 1096 RSTRGTALPGQDGEDRPSGEGRQSGGPGIQAVWEAGTSGV 1135
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Frame = +3
Query: 465 GGRNRGREDGAVARAGTGAP----HPGQEGERAPAARGRLQGEAHVRLLRGEAAS-GLPA 629
G G + + GAP PG++GE+ R L G + +GE G
Sbjct: 346 GSGGSGCNGTTIFKGPPGAPGEKGEPGKQGEKGEEGRPGLPGAQGIEGPKGERGEPGNQG 405
Query: 630 REVERGAPSRPEAHGRLDSEQR 695
+ +RG P G L S+ R
Sbjct: 406 LKGDRGVDGNPGPIGPLVSKDR 427
>SB_30893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/83 (14%), Positives = 40/83 (48%)
Frame = +1
Query: 418 TENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYAY 597
++ EW + + + +EG+ +W+ + E + +++ + Q + ++ R
Sbjct: 74 SDREWKNRKTENGRTERQRMEGQSDREWKNRKTETR-RTERQRMEEQKDREWKNRKTENG 132
Query: 598 SEVKRRLDYQLEKSNVERRLAQK 666
V++R++ Q ++ +R++ +
Sbjct: 133 RTVRQRMEEQKDREWKDRKIENR 155
>SB_44710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 835
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 267 TKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRASKGFLVVCCY 130
TK + H+ R + PFF ++ K + W T A+ G++V Y
Sbjct: 149 TKEINNMHSELR--KSIPFFSSRYKGHGIWDTLMAANLGYMVAFMY 192
>SB_11762| Best HMM Match : 4HBT (HMM E-Value=1.6e-19)
Length = 519
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 454 VKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQL--EAAYRERLMYAYSEVKRRL 618
V ++ED I GEK E R + AK V L ERL YA + +RR+
Sbjct: 91 VVSVEDLITGEKREVSRGFFTFVAFDAKHNKVQLSPIDPVTEEERLQYALASERRRM 147
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.132 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,268,918
Number of Sequences: 59808
Number of extensions: 481024
Number of successful extensions: 1807
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1794
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -