Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0116
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11420.1 68417.m01840 eukaryotic translation initiation facto...    34   0.078
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri...    32   0.32 
At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase, pu...    32   0.32 
At3g24120.2 68416.m03029 myb family transcription factor contain...    30   1.7  
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila...    29   2.2  
At3g22810.1 68416.m02875 expressed protein  ; expression support...    28   5.1  
At3g13330.1 68416.m01678 expressed protein                             28   5.1  
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016...    28   5.1  
At1g32730.1 68414.m04036 expressed protein                             28   6.8  
At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containi...    27   9.0  
At5g52170.1 68418.m06476 homeobox-leucine zipper family protein ...    27   9.0  
At5g42760.1 68418.m05207 O-methyltransferase N-terminus domain-c...    27   9.0  
At4g12780.1 68417.m02005 auxilin-related low similarity to SP|Q2...    27   9.0  
At2g32370.1 68415.m03956 homeobox-leucine zipper family protein ...    27   9.0  

>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
           subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
           eukaryotic translation initiation factor 3 subunit 10
           (eIF-3 theta) (Eukaryotic translation initiation factor
           3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
           SWISS-PROT:Q9LD55
          Length = 987

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
 Frame = +1

Query: 463 LEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLM--YAYSEVKRRLDYQLEK 636
           L++  E EK  Q  A+  + L +AK+E     +EAAY+ RL+    + E +++ + +L K
Sbjct: 671 LKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSK 730

Query: 637 SNVERRLAQKHMVDWIVSN 693
              E  L +K+ +  ++ N
Sbjct: 731 ERHESDLKEKNRLSRMLGN 749


>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
           fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
          Length = 320

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 465 GGRNRGR--EDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHV 590
           GGR  GR   D      G G P  G  G R PA RG ++G + V
Sbjct: 37  GGRGGGRGFSDRGGRGRGRGPPRGGARGGRGPAGRGGMKGGSKV 80


>At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase-related protein XTR4
           GI:1244754 from [Arabidopsis thaliana]
          Length = 357

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 196 GFIPEEWFQ--FFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHE 321
           GFI    +Q  FF S   + G YT G+ +A Y  + +++V +H+
Sbjct: 73  GFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHD 116


>At3g24120.2 68416.m03029 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 298

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = +1

Query: 439 GRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRRL 618
           G+  T  + + +  GE  +   +    + +  +++N   Q+  A R ++     EV+RRL
Sbjct: 100 GKESTENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEALRAQM-----EVQRRL 154

Query: 619 DYQLEKSNVERRL 657
             QLE   V+RRL
Sbjct: 155 HDQLEYGQVQRRL 167


>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
           to ribosomal protein S2 GI:939717 from (Urechis caupo)
          Length = 284

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +3

Query: 453 RESTGGRNRGREDGAVARAGTGAPHPGQEGERAPAARGRLQGEA 584
           R   GG  RG + G   R   G    G+  +R P  RGR  G A
Sbjct: 4   RGGEGGAERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGGRA 47


>At3g22810.1 68416.m02875 expressed protein  ; expression supported
           by MPSS
          Length = 472

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +1

Query: 463 LEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRR 615
           +ED   G    +W A+G +LL + +K ++  ++ + Y  RL     ++K R
Sbjct: 340 VEDNFLGHCNREWLARGGQLLKRTRKGDLHWKIVSVYINRLNQVILKMKSR 390


>At3g13330.1 68416.m01678 expressed protein
          Length = 1711

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 143 SCVATSEAEPRATSAVHAVCLLAPERKATRDTLFIVYFISI 21
           SCV ++E   +    +HA C    E+K+  D++ ++  I I
Sbjct: 783 SCVGSAEIREKTAITIHAACKYLLEKKSD-DSILLILIIRI 822


>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
            reticulocyte binding protein; similar to  Myosin heavy
            chain, non-muscle (Zipper protein) (Myosin II)
            (SP:Q99323) {Drosophila melanogaster} similar to EST
            gb|T76116
          Length = 1730

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +1

Query: 406  EVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERL 585
            EV+A  ++  E +   +K +EDA+   +    R   +   +QA KEN  L+L+ A  +  
Sbjct: 865  EVDALTSKLAETQT-ALKLVEDALSTAEDNISRLTEENRNVQAAKENAELELQKAVADA- 922

Query: 586  MYAYSEVKRRLDYQL-EKSNVERRLAQ 663
                S V   LD  L  KS +E  L Q
Sbjct: 923  ----SSVASELDEVLATKSTLEAALMQ 945


>At1g32730.1 68414.m04036 expressed protein
          Length = 327

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/77 (27%), Positives = 32/77 (41%)
 Frame = +1

Query: 382 KLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQL 561
           KL  + D+ +E  ENE  +     V  LE+A          + G     Q K+EN++ +L
Sbjct: 137 KLKEYRDRNIEV-ENEAFDRYMSNVNLLEEAFSFTSVPDEESHGTAAPEQNKEENIVSEL 195

Query: 562 EAAYRERLMYAYSEVKR 612
           +   R       S  KR
Sbjct: 196 KLRLRSNSARTESFKKR 212


>At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 974

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 457 KALEDAIEGEKTEQWRAQGQELLIQAKKENVLL 555
           +A    IEG   E+   QG ELL++ KK N+++
Sbjct: 383 QAYASLIEGYCREKNVRQGYELLVEMKKRNIVI 415


>At5g52170.1 68418.m06476 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           Anthocyaninless2 (ANL2) (GP:5702094) [Arabidopsis
           thaliana];  contains Pfam PF00046: Homeobox domain and
           Pfam PF01852: START domain
          Length = 682

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -1

Query: 249 RHTSFRVEELEPFFR 205
           RHTS++++ELE FF+
Sbjct: 63  RHTSYQIQELESFFK 77


>At5g42760.1 68418.m05207 O-methyltransferase N-terminus
           domain-containing protein contains Pfam profile PF02409:
           O-methyltransferase N-terminus
          Length = 344

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 696 HVAHYPVDHVLLGETALHVRLLELVVQT 613
           HV H P+ H+  GET  H+R L   +QT
Sbjct: 66  HVIHDPLAHLFAGET--HLRNLHTKIQT 91


>At4g12780.1 68417.m02005 auxilin-related low similarity to
           SP|Q27974 Auxilin {Bos taurus}
          Length = 485

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +3

Query: 534 QEGERAPA-ARGRLQGEAHVRLLRGEAASGLPARE-VERGAPSRPEAHGR 677
           Q  ERA   AR R   EAH ++ R        ARE  ER A  R  A  R
Sbjct: 132 QAVERATREARERAATEAHAKVQRAAVGKATDARERAERAAVQRAHAEAR 181


>At2g32370.1 68415.m03956 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           HD-Zip homeo domain OCL5 protein (GI:8920427) [Zea
           mays]; contains Pfam PF00046: Homeobox domain and Pfam
           PF01852: START domain
          Length = 721

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 270 HTKSVRTRHTSFRVEELEPFFR 205
           H K    RHT  ++ E+E FFR
Sbjct: 67  HKKKKYNRHTQLQISEMEAFFR 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.132    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,244,408
Number of Sequences: 28952
Number of extensions: 322748
Number of successful extensions: 1040
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)