Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0115
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    28   1.1  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    27   1.9  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      25   5.8  

>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = -2

Query: 349 YPLQITPLRYIIQSLNEIHYHVMFGIKL*YFIKYRSGFGETVISKSQTNHL*Y--VNYIY 176
           + L   PLR I +  N  HYH++ G+ L YFI Y        I   + NHL +  V + +
Sbjct: 143 FSLATMPLRNIFK--NCAHYHLLSGLFLAYFI-YGPWHANDYI---KPNHLLFLIVGWAF 196

Query: 175 S-LS*FQLFIIIR 140
           + LS F+  II+R
Sbjct: 197 AVLSNFRTHIILR 209


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 33  ETTVFNIFRNYLKQKPE 83
           +T V N FR YL+QKPE
Sbjct: 219 KTKVKNYFRTYLRQKPE 235


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 518 PNLISPKKYTNPNTLWQLF*YIFLPN 441
           P L+S  K T+P+++W +  ++FL N
Sbjct: 159 PILMSLTKSTSPDSVWAIAVWLFLAN 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,521
Number of Sequences: 5004
Number of extensions: 34988
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)