Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0114
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   6.7  
SB_16078| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_11995| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   8.8  

>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 307 KHYTLLLIFVVLFALCFVPN 366
           K   LL++ VV FALCF+PN
Sbjct: 849 KFIRLLIVLVVTFALCFLPN 868


>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 403 FKRIKCKIIINYDHY*ILQLSSSRKFTCVSLILE-AKIIEGFTNTHV 540
           FK   CKI+ N         ++SRKFTC +L  +  K+IE   N HV
Sbjct: 655 FKMAACKIMAN---------TNSRKFTCTALGRKTGKLIEADKNAHV 692


>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 2682

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 221  KHTSEAGKGVLKRDRHIN-S*DKVRKNEIGSIIHCFLYSWFSLRSASYLIFVLNT 382
            K T +     LK DR +  +  KV K++  S++ CF+ +W S+     L+F+  T
Sbjct: 1134 KETRKRKLDALKPDRKMKRARSKVEKSQTPSLM-CFVMTWKSISRPEILMFIHKT 1187


>SB_16078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 392

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 301 DRKHYTLLLIFVVLFALCFVP 363
           +RK   +LL+ V+LF +C++P
Sbjct: 261 ERKFIRMLLVVVILFVICYMP 281


>SB_11995| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 364

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 23/80 (28%), Positives = 37/80 (46%)
 Frame = +1

Query: 304 RKHYTLLLIFVVLFALCFVPNIRT*YILNKSM*FKRIKCKIIINYDHY*ILQLSSSRKFT 483
           +K   +LLI ++LFALC++P   T +IL     F       I+ +  Y +L   +S    
Sbjct: 245 KKVLRMLLIVLLLFALCWLPVHVTSFILF----FGTCSPPPILTWIGY-LLSQGNSAINP 299

Query: 484 CVSLILEAKIIEGFTNTHVC 543
           C+ +I      +GF     C
Sbjct: 300 CIYVIFNESYRQGFARLVCC 319


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,327,072
Number of Sequences: 59808
Number of extensions: 314607
Number of successful extensions: 712
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)