Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0112
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0160 + 14247463-14247584,14247710-14247923,14250099-142502...    29   2.6  
07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891           28   7.8  

>11_04_0160 +
           14247463-14247584,14247710-14247923,14250099-14250215,
           14251578-14251670,14251748-14251922,14252981-14253017,
           14253842-14253875,14254212-14254481,14255768-14255872,
           14256295-14256392,14256474-14256616,14257197-14257290,
           14257378-14257487,14258018-14258172,14258252-14258332,
           14258415-14258535,14259358-14259464,14259537-14259668,
           14261105-14261258,14264094-14264211,14264344-14264517,
           14264831-14264882,14265450-14265577,14265670-14265820,
           14265904-14266242
          Length = 1107

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 369 IYTGHIKIASKNDGTELHFSDAVY 298
           +YTG +KI  ++DGT L   D +Y
Sbjct: 238 VYTGCVKIFMQSDGTRLILKDTIY 261


>07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891
          Length = 1274

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -2

Query: 458 YSRVPLQNMFFYIFVSNL 405
           Y+RV L ++FF++F+SNL
Sbjct: 598 YARVLLLDLFFFLFISNL 615


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,220,282
Number of Sequences: 37544
Number of extensions: 297895
Number of successful extensions: 556
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)