Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0112
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40409-5|AAL27247.1|  589|Caenorhabditis elegans Activator of g ...    30   1.3  
U40409-4|AAA81387.1|  579|Caenorhabditis elegans Activator of g ...    30   1.3  
X72942-1|CAA51447.1|  335|Caenorhabditis elegans Wnt-1 protein.        29   3.0  
X72941-1|CAA51446.1|  372|Caenorhabditis elegans Wnt-1 protein p...    29   3.0  
AF025463-6|AAO38623.1|  332|Caenorhabditis elegans C. elegans wn...    29   3.0  
AF025463-5|AAB71011.1|  372|Caenorhabditis elegans C. elegans wn...    29   3.0  
Z30317-1|CAA82967.1|  213|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z78417-6|CAC42263.1|  336|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U40409-5|AAL27247.1|  589|Caenorhabditis elegans Activator of g
           protein signallingprotein 3, isoform b protein.
          Length = 589

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/84 (27%), Positives = 42/84 (50%)
 Frame = +2

Query: 248 HALTVHRPLKSQHFCLSYTASLKCSSVPSFLEAIFICPVYILGYI*KKLEKNVNYLRKYK 427
           HAL  + PL  QH+ L+Y  +++  +     EA     +    YI K+++K + Y +++ 
Sbjct: 245 HALKSNMPLAIQHYKLAYNLAIEIGNKTE--EAQMAYSLANALYIGKEVQKAITYFQRHL 302

Query: 428 KTCFVREPLNTRNRYINTTLRLSF 499
           K     E ++ + R    +L LSF
Sbjct: 303 KIARSLEDISGQLRSY-YSLALSF 325


>U40409-4|AAA81387.1|  579|Caenorhabditis elegans Activator of g
           protein signallingprotein 3, isoform a protein.
          Length = 579

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/84 (27%), Positives = 42/84 (50%)
 Frame = +2

Query: 248 HALTVHRPLKSQHFCLSYTASLKCSSVPSFLEAIFICPVYILGYI*KKLEKNVNYLRKYK 427
           HAL  + PL  QH+ L+Y  +++  +     EA     +    YI K+++K + Y +++ 
Sbjct: 235 HALKSNMPLAIQHYKLAYNLAIEIGNKTE--EAQMAYSLANALYIGKEVQKAITYFQRHL 292

Query: 428 KTCFVREPLNTRNRYINTTLRLSF 499
           K     E ++ + R    +L LSF
Sbjct: 293 KIARSLEDISGQLRSY-YSLALSF 315


>X72942-1|CAA51447.1|  335|Caenorhabditis elegans Wnt-1 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 519 PCVACKTLRSTTHRSQRRKCTKNVDIL 599
           P  +CK+L+  T R Q R C KN+D++
Sbjct: 38  PGTSCKSLKGLTRR-QMRFCKKNIDLM 63


>X72941-1|CAA51446.1|  372|Caenorhabditis elegans Wnt-1 protein
           protein.
          Length = 372

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 519 PCVACKTLRSTTHRSQRRKCTKNVDIL 599
           P  +CK+L+  T R Q R C KN+D++
Sbjct: 38  PGTSCKSLKGLTRR-QMRFCKKNIDLM 63


>AF025463-6|AAO38623.1|  332|Caenorhabditis elegans C. elegans wnt
           family protein 1,isoform b protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 519 PCVACKTLRSTTHRSQRRKCTKNVDIL 599
           P  +CK+L+  T R Q R C KN+D++
Sbjct: 38  PGTSCKSLKGLTRR-QMRFCKKNIDLM 63


>AF025463-5|AAB71011.1|  372|Caenorhabditis elegans C. elegans wnt
           family protein 1,isoform a protein.
          Length = 372

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 519 PCVACKTLRSTTHRSQRRKCTKNVDIL 599
           P  +CK+L+  T R Q R C KN+D++
Sbjct: 38  PGTSCKSLKGLTRR-QMRFCKKNIDLM 63


>Z30317-1|CAA82967.1|  213|Caenorhabditis elegans Hypothetical
           protein T16G12.4 protein.
          Length = 213

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 278 SQHFC-LSYTASLKCSSVPSFLEAIFICPVYILGYI*KKLEKNVNYLRKYK 427
           +Q FC L  T  + CS +  ++  + + P+++  Y   + ++ +NY  ++K
Sbjct: 92  TQDFCTLILTWIITCSQLILYVFLLIVIPIFLTDYFASEAQRYMNYPHEWK 142


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical protein
            E01G6.1 protein.
          Length = 1391

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 509  LQDPMCSVQNSQVNDPSLSASEMYKKCR 592
            + DP+  ++N+++  P+L+ +EM KK R
Sbjct: 1043 MPDPIPGIENARILPPALAQAEMEKKIR 1070


>Z78417-6|CAC42263.1|  336|Caenorhabditis elegans Hypothetical
           protein C35C5.8a protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 436 FCKGTLEYTKPIYQYHTASKLCRYTSRSHV*RAKLSGQRPIALSVGN 576
           F  G  EYTKP ++   A    RY++   + R  +   + +A    N
Sbjct: 188 FSAGVEEYTKPCFEEMLAYNYTRYSAGRRIARTHIRATKEVAELTAN 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,618,065
Number of Sequences: 27780
Number of extensions: 289226
Number of successful extensions: 647
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)