Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0111
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0002 - 26979873-26980823                                         29   2.8  
01_01_0095 + 733307-734060,734779-734802,735029-736098                 28   6.4  

>05_07_0002 - 26979873-26980823
          Length = 316

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 509 AALT*ETGRTIKRSAAFRKHIADRGHGEAHSLSQLKMFDRYNKFCS 372
           AA   E GR    +   +KH+ D+G G A  +  ++  D   +FCS
Sbjct: 193 AAAKKEIGRL---TTLIKKHLGDQGEGRAMDIGVVRSTDYLRRFCS 235


>01_01_0095 + 733307-734060,734779-734802,735029-736098
          Length = 615

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 590 YRKCRCELYRSSPGSRCLLASFVQIPSASGTKD 688
           Y   RC LY + PG + +  S V  PS S T D
Sbjct: 106 YHSSRCSLYNAQPG-KIVCCSKVLTPSMSPTND 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,942,200
Number of Sequences: 37544
Number of extensions: 306813
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)