Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0111
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83104-4|CAB05478.2|  582|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    28   5.8  

>Z83104-4|CAB05478.2|  582|Caenorhabditis elegans Hypothetical
           protein F09B12.3 protein.
          Length = 582

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 488 GRTIKRSAAFRKHIADRGHGEAHSLSQLKMFDRYNKF 378
           G   K  A+ R  I +R HG  H L  L    RYN +
Sbjct: 436 GDWFKWGASPRAKIFERDHGNVHDLDSLTALMRYNDY 472


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 235 RSVYKFITFYNT--NRTIFLKKKMEFSL-PKTILKHNKNNIKCS 113
           R ++ + +F  T  NRT   +++   +  PK I K++KNNI  S
Sbjct: 615 RKIFPYFSFKYTFMNRTALNRRRKNLANNPKNIFKYSKNNINLS 658


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 235 RSVYKFITFYNT--NRTIFLKKKMEFSL-PKTILKHNKNNIKCS 113
           R ++ + +F  T  NRT   +++   +  PK I K++KNNI  S
Sbjct: 615 RKIFPYFSFKYTFMNRTALNRRRKNLANNPKNIFKYSKNNINLS 658


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 235 RSVYKFITFYNT--NRTIFLKKKMEFSL-PKTILKHNKNNIKCS 113
           R ++ + +F  T  NRT   +++   +  PK I K++KNNI  S
Sbjct: 661 RKIFPYFSFKYTFMNRTALNRRRKNLANNPKNIFKYSKNNINLS 704


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,492,125
Number of Sequences: 27780
Number of extensions: 308488
Number of successful extensions: 643
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)