Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0111
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.41 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   6.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 208 YNTNRTIFLKKKMEFSLPKTILKHNKNNIK 119
           Y TNR++F++++ E    + +L+H K   +
Sbjct: 131 YPTNRSLFIREQTEEMYREMLLEHKKRRAR 160



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 333 SLILRWSTESAVRTTQPILTYSGVRNALIHLQTDPCI 223
           S  +R  TES  +        SG  + L H +TDPC+
Sbjct: 686 SQYIREQTESDDKEGYLHSVVSGALDRL-HYETDPCV 721


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = -2

Query: 531 CSHSIKLRCINIRNWTNH*KVRSFP 457
           C  S+  + I+++ W ++  +  FP
Sbjct: 322 CMRSVDAKTISVQQWNSYWGILGFP 346


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = -2

Query: 531 CSHSIKLRCINIRNWTNH*KVRSFP 457
           C  S+  + I+++ W ++  +  FP
Sbjct: 322 CMRSVDAKTISVQQWNSYWGILGFP 346


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 419 SLSQLKMFDRYNKFCSAPQNNYRNAPQN 336
           SLS    +  YN + +   NNY N   N
Sbjct: 84  SLSNNYKYSNYNNYNNNYNNNYNNNYNN 111


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 419 SLSQLKMFDRYNKFCSAPQNNYRNAPQN 336
           SLS    +  YN + +   NNY N   N
Sbjct: 84  SLSNNYKYSNYNNYNNNYNNNYNNNYNN 111


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 146 YGFRQTKFHFFFQKNCSVCVIKSYK 220
           +GF+ T  H+  +++CS    + YK
Sbjct: 222 HGFQHTSSHYSRERSCSRDRNREYK 246



 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 419 SLSQLKMFDRYNKFCSAPQNNYRN 348
           SLS    +  YN + +   NNY N
Sbjct: 317 SLSNNYKYSNYNNYNNYNNNNYNN 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,394
Number of Sequences: 438
Number of extensions: 4203
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)