Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0110
(367 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 30 0.64
08_01_0371 - 3284103-3284582 29 1.1
01_02_0098 - 11087875-11089110,11091744-11092022 27 3.4
10_08_0575 + 18885403-18885483,18885591-18885949,18886320-18886617 27 4.5
09_02_0201 + 5728377-5728584,5729044-5729153,5729231-5729286,572... 27 4.5
05_01_0439 - 3477600-3477703,3480136-3480472 27 4.5
02_05_0943 + 32976990-32976996,32977119-32977464,32977586-329777... 27 4.5
11_01_0565 - 4457019-4457052,4457175-4458675,4460791-4460836 27 6.0
09_06_0278 + 21991016-21992120,21992341-21992702,21992766-219934... 27 6.0
08_02_1430 - 27048055-27048408,27049674-27049841,27049927-270500... 27 6.0
07_03_0776 + 21417476-21417691,21417775-21417855,21417941-214183... 27 6.0
11_06_0264 - 21785450-21786928 26 7.9
09_06_0281 + 22014394-22015534,22016041-22017056 26 7.9
09_04_0392 + 17251536-17252336 26 7.9
04_01_0274 + 3638409-3639332 26 7.9
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 29.9 bits (64), Expect = 0.64
Identities = 19/35 (54%), Positives = 21/35 (60%)
Frame = -2
Query: 264 TLTSLVGPATAQSPTRRRTLAQVQPERGGSNIGSP 160
TL L+ PA A SPTRRR L + P SN GSP
Sbjct: 25 TLPRLL-PAAAPSPTRRRRL--LAPLAAASNSGSP 56
>08_01_0371 - 3284103-3284582
Length = 159
Score = 29.1 bits (62), Expect = 1.1
Identities = 21/68 (30%), Positives = 26/68 (38%)
Frame = +2
Query: 44 GGETSAVAAHPLRENRADRLDGTEAGRRVRQTTRSRLQHGLPILEPPRSGCTCARVRRLV 223
GGE A A+ R A+ R VR+ R G P + P R C R L
Sbjct: 32 GGEAEASASQAWRRGDANVHSDVRVRRGVRRPLRRTATGGAPPMLPQRKRCPTNRRAMLR 91
Query: 224 GDCAVAGP 247
A +GP
Sbjct: 92 RGGARSGP 99
>01_02_0098 - 11087875-11089110,11091744-11092022
Length = 504
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 51 RLPRSR-PTHSARTGQIASTVRRPADGS 131
RLP+S+ P AR Q AS RRP DG+
Sbjct: 12 RLPQSQAPRRQARGLQYASPERRPLDGA 39
>10_08_0575 + 18885403-18885483,18885591-18885949,18886320-18886617
Length = 245
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 45 EVRLPRSRPTHSA-RTGQIASTVRRPADGSAKRRDHASSTDCRYWS 179
EVR PR T S ++ S V P R + ++TD R+W+
Sbjct: 15 EVRAPRGNLTSSPPHNWRLKSEVVAPQREEDPRSNRRTATDARFWT 60
>09_02_0201 +
5728377-5728584,5729044-5729153,5729231-5729286,
5729396-5729480,5729550-5729597,5729723-5729797,
5729893-5730004,5730371-5730536,5730579-5730630,
5730729-5730786,5731029-5731127,5731219-5731349
Length = 399
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 146 SRLQHGLPILEPPRSGCTCARVR 214
S LQH LPI+ P RS +C+ R
Sbjct: 220 SLLQHFLPIMNPVRSESSCSSSR 242
>05_01_0439 - 3477600-3477703,3480136-3480472
Length = 146
Score = 27.1 bits (57), Expect = 4.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 8 CRKMSCESAQVAGGETSAVAAHPLRENRADRLDGTEAGRRVRQTT 142
C M +A+VAG + P R N ADR G + G +Q T
Sbjct: 75 CAVMLSNTARVAGIKPEVAITIPKRCNMADRPVGYKCGGHSQQPT 119
>02_05_0943 +
32976990-32976996,32977119-32977464,32977586-32977796,
32977997-32978072,32978175-32978277,32978601-32978669,
32978785-32978821,32978904-32978978,32979052-32979103,
32979188-32979232,32979342-32979442
Length = 373
Score = 27.1 bits (57), Expect = 4.5
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 59 AVAAHPLRENRADRL--DGTEAGRRVRQTTRSRLQHGLPILEPPRSGCTCARVRRLV 223
A A P EN + ++ D GR +T QH L E SGCTC V R++
Sbjct: 108 AAATVPPFENISPKMLADSMTLGRDNGRTREPVDQHSL---EENHSGCTCVAVPRII 161
>11_01_0565 - 4457019-4457052,4457175-4458675,4460791-4460836
Length = 526
Score = 26.6 bits (56), Expect = 6.0
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Frame = +2
Query: 53 TSAVAAHPLRENRADR---LD-----GTEAGRRVRQTTRSRLQHGLPILEPPRSGCTCAR 208
T AV P+ N A R LD G R + + + + + +GL + PP SG A
Sbjct: 88 TDAVITVPVYFNNAQREATLDAAAIAGLNVMRIINEPSAAAIAYGLDKMPPPASGADAAG 147
Query: 209 VRRLVGDCAVAGPTRDVNVCSRA 277
L+ D + G T DV++ + A
Sbjct: 148 RTVLIFD--LGGGTLDVSLLNIA 168
>09_06_0278 +
21991016-21992120,21992341-21992702,21992766-21993459,
21994064-21994191
Length = 762
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 185 RSGCTCARVRRLVGDCAVAGPTRDVNVCSRA 277
RSG C + G+ VAG +D+N C RA
Sbjct: 299 RSGYVCRCDKGYDGNPYVAGGCQDINECERA 329
>08_02_1430 -
27048055-27048408,27049674-27049841,27049927-27050042,
27050153-27050305,27050850-27050993,27051052-27051211,
27051332-27051970
Length = 577
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 11 RKMSCESAQVAGGETSAVAAHPLRENRADRLDGT 112
R+MS S+ GG S+ A LRE D DG+
Sbjct: 140 RRMSSASSSRGGGAASSAAVVRLREACEDAADGS 173
>07_03_0776 +
21417476-21417691,21417775-21417855,21417941-21418342,
21418457-21418621,21418729-21419460,21419542-21419748
Length = 600
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +2
Query: 131 RQTTRSRLQHGLPILEPPRSGCTCARVRRLVGD 229
R T RSR P+L PP +G R RRLV D
Sbjct: 17 RWTCRSRAASPAPLLPPPATG--RRRRRRLVAD 47
>11_06_0264 - 21785450-21786928
Length = 492
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 225 PTRRRTLAQVQPERGGSNIGSPCWRRDLVVW 133
P R A + + GG + SP RRD VW
Sbjct: 428 PMLRPNCAYLTDDAGGDVVRSPAARRDFGVW 458
>09_06_0281 + 22014394-22015534,22016041-22017056
Length = 718
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 185 RSGCTCARVRRLVGDCAVAGPTRDVNVCSRASVCY 289
R G C R G+ VAG +D++ C A CY
Sbjct: 313 RRGYVCRCRRGYGGNPYVAGGCQDIDECKLAGRCY 347
>09_04_0392 + 17251536-17252336
Length = 266
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +2
Query: 5 GCRKMSCESAQVAGGETSAVAAHPLRENRADRLDGTEAGRRVRQTTRSRLQHGL 166
GC A+ AG E + +A A + G G+RVR+ + + G+
Sbjct: 72 GCLGCDFFGAEAAGNEEAVMATDYAAAAAAAAVAGGSGGKRVRRRRKKNVYRGV 125
>04_01_0274 + 3638409-3639332
Length = 307
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 193 LHLR*GAPPRRRL-CCGRSNQRRQRVFQSF 279
LH A ++RL GR++++R RVFQSF
Sbjct: 257 LHTSGTATDKKRLENTGRNSEQRSRVFQSF 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,092,333
Number of Sequences: 37544
Number of extensions: 221708
Number of successful extensions: 722
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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