Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0110
         (367 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_15702| Best HMM Match : Ded_cyto (HMM E-Value=0)                    26   8.1  

>SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 910

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 194 CTCARVRRLVGDCAVAGPTRDVNVCSRASVCYR*VVLAP 310
           C C  VR L+ +C        ++VC R  +C R  ++ P
Sbjct: 827 CPCVLVRGLMHECQCVLVRGLMHVCQRLCLCARLALIRP 865


>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 332  DPEWNIKGEPKPLICNTLKLWNT 264
            DP   +  +PKP +CN  + W T
Sbjct: 966  DPFSVVNEDPKPYVCNEPECWKT 988


>SB_15702| Best HMM Match : Ded_cyto (HMM E-Value=0)
          Length = 331

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 130 DPSAGLRTVEAICPVLAEWVGRDRGSLTSGY 38
           DP+A +R     C  +  W+  DRG++T GY
Sbjct: 273 DPTAVVRCSWVDCTRIVGWLNTDRGAIT-GY 302


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,960,537
Number of Sequences: 59808
Number of extensions: 224029
Number of successful extensions: 740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)