Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0110
         (367 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42060.1 68416.m04315 myosin heavy chain-related                    31   0.31 
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica...    26   6.7  
At5g03435.1 68418.m00297 C2 domain-containing protein contains P...    26   6.7  
At1g50790.1 68414.m05712 hypothetical protein                          26   6.7  
At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein ...    26   6.7  
At5g17160.1 68418.m02010 expressed protein                             26   8.8  
At5g03700.1 68418.m00330 PAN domain-containing protein contains ...    26   8.8  
At5g01200.1 68418.m00025 myb family transcription factor contain...    26   8.8  

>At3g42060.1 68416.m04315 myosin heavy chain-related
          Length = 712

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 279 EALEHTLTSLVGPATAQSPTRRRTLAQVQPERGGSNIGSP 160
           + L+ T  S+  P+   S +R+R  ++  PE G SN+G P
Sbjct: 440 KVLKETTGSVPFPSVGGSRSRKRDSSRRSPETGPSNVGKP 479


>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 1277

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 11  RKMSCESAQVAGGETSAVAAHPLRENRADRLDGTE 115
           RKM  ES    G E+  +A  PLR  + ++LD  E
Sbjct: 293 RKMEMESYAPVGVESCILAPTPLRVVKPEKLDTPE 327


>At5g03435.1 68418.m00297 C2 domain-containing protein contains Pfam
           profile PF00168: C2 domain
          Length = 745

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -3

Query: 323 WNIKGEPK-PLICNTLKLW 270
           WN +  P+ PLI N LKLW
Sbjct: 600 WNKRENPRSPLIVNDLKLW 618


>At1g50790.1 68414.m05712 hypothetical protein
          Length = 812

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 362 LWLCFIRLHSDPEWNIKGEPKPLICNTLK 276
           +W  F  L S P   +KGEP+  + N LK
Sbjct: 274 IWERFRALQSKPNLLLKGEPRLALWNDLK 302


>At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 362

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 107 GTEAGRRVRQTTR-SRLQHGLPILEPPR 187
           G +A  R   T     L HGLP+L PPR
Sbjct: 185 GLDAPSRTTSTASFGPLLHGLPLLRPPR 212


>At5g17160.1 68418.m02010 expressed protein
          Length = 569

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 267 HTLTSL--VGPATAQSPTRRRTLAQVQPERGGSNIGSPC 157
           H+ TS+  + P+TA   TRR+T  + +P+     +   C
Sbjct: 55  HSPTSVAKLPPSTATRTTRRKTTTKAEPQPSSQLVSRSC 93


>At5g03700.1 68418.m00330 PAN domain-containing protein contains
           Pfam profile: PF00024 PAN domain
          Length = 482

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 182 PRSGCTCARVRRLVGDCAVA 241
           P SGC+C   R ++G+C  A
Sbjct: 303 PGSGCSCIDNRTVIGECTHA 322


>At5g01200.1 68418.m00025 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 267

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 69  AATAEVSPPATCADSQDIFLQP 4
           A TA+V+   T A+S D+FLQP
Sbjct: 224 ATTADVALSPTPANSFDVFLQP 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,131,478
Number of Sequences: 28952
Number of extensions: 146977
Number of successful extensions: 417
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)