Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0108
(570 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VXI1 Cluster: CG9914-PA; n=5; Diptera|Rep: CG9914-PA ... 111 8e-24
UniRef50_UPI0000588BF0 Cluster: PREDICTED: similar to 3-hydroxya... 98 1e-19
UniRef50_Q9Y2S2 Cluster: Lambda-crystallin homolog; n=30; Coelom... 95 1e-18
UniRef50_Q1RLR0 Cluster: LOC570274 protein; n=4; Clupeocephala|R... 79 7e-14
UniRef50_A7SBT1 Cluster: Predicted protein; n=2; Nematostella ve... 75 9e-13
UniRef50_A5A8P0 Cluster: Putative uncharacterized protein; n=3; ... 73 6e-12
UniRef50_Q0FUQ2 Cluster: 3-hydroxybutyryl-CoA dehydrogenase; n=2... 53 4e-06
UniRef50_Q7WLK3 Cluster: Putative 3-hydroxyacyl-CoA dehydrogenas... 51 2e-05
UniRef50_Q98LG2 Cluster: Mll1034 protein; n=5; Alphaproteobacter... 50 4e-05
UniRef50_Q11EZ3 Cluster: 3-hydroxyacyl-CoA dehydrogenase, NAD-bi... 48 1e-04
UniRef50_Q2CEL4 Cluster: 3-hydroxybutyryl-CoA dehydrogenase; n=2... 46 5e-04
UniRef50_Q6SEY0 Cluster: 3-hydroxyacyl-CoA dehydrogenase domain ... 46 6e-04
UniRef50_A1FMQ0 Cluster: 3-hydroxyacyl-CoA dehydrogenase, NAD-bi... 43 0.004
UniRef50_A5G288 Cluster: 3-hydroxyacyl-CoA dehydrogenase, NAD-bi... 42 0.010
UniRef50_Q160J3 Cluster: Putative 3-hydroxyacyl-CoA dehydrogenas... 42 0.013
UniRef50_A1B801 Cluster: 3-hydroxyacyl-CoA dehydrogenase, NAD-bi... 39 0.095
UniRef50_Q93QG7 Cluster: Hydroxyacyl-CoA dehydrogenase; n=1; Bre... 37 0.29
UniRef50_A3VGB5 Cluster: 3-hydroxybutyryl-CoA dehydrogenase; n=2... 37 0.29
UniRef50_Q7RN38 Cluster: Putative uncharacterized protein PY0198... 36 0.51
UniRef50_Q6CTU7 Cluster: Similar to sgd|S0006086 Saccharomyces c... 34 2.7
UniRef50_Q7RPE8 Cluster: Aspartyl-tRNA synthetase, putative; n=7... 33 3.6
UniRef50_A0D6L1 Cluster: Chromosome undetermined scaffold_4, who... 33 6.2
UniRef50_A6LPC7 Cluster: Sensor protein; n=1; Clostridium beijer... 32 8.2
>UniRef50_Q9VXI1 Cluster: CG9914-PA; n=5; Diptera|Rep: CG9914-PA -
Drosophila melanogaster (Fruit fly)
Length = 315
Score = 111 bits (268), Expect = 8e-24
Identities = 53/94 (56%), Positives = 68/94 (72%)
Frame = +2
Query: 56 MSEGLGMRYAFLGALETAHLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCE 235
MS GLG RYAFLG LETAHLNAEGM +Y +RY TIY VS MGP P+M V +
Sbjct: 223 MSNGLGPRYAFLGPLETAHLNAEGMANYFERYSNTIYAVSETMGPTPKM-EGPVAVEVAK 281
Query: 236 QLEKLVPIEKLQDRRNWRDLCLMRLSLLKKEMNK 337
QL ++VP+++L RRN+RD CL +LS+LK ++N+
Sbjct: 282 QLGEMVPLDQLAQRRNYRDNCLTQLSILKNKLNQ 315
>UniRef50_UPI0000588BF0 Cluster: PREDICTED: similar to
3-hydroxyacyl-coa dehyrogenase; n=5; Coelomata|Rep:
PREDICTED: similar to 3-hydroxyacyl-coa dehyrogenase -
Strongylocentrotus purpuratus
Length = 316
Score = 98.3 bits (234), Expect = 1e-19
Identities = 43/95 (45%), Positives = 64/95 (67%)
Frame = +2
Query: 56 MSEGLGMRYAFLGALETAHLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCE 235
MS GLG+RYAFLG LE HLNAEGMQSY++RY ++I V GP P T + +
Sbjct: 221 MSAGLGLRYAFLGPLEVMHLNAEGMQSYMERYTQSIEHVLGNFGPTPTF-TGSGLEQIIK 279
Query: 236 QLEKLVPIEKLQDRRNWRDLCLMRLSLLKKEMNKK 340
+++ +P++KL++RR WRD L L+ LK+++ ++
Sbjct: 280 EMDAKIPLDKLEERRQWRDTRLAALAKLKRDLERE 314
>UniRef50_Q9Y2S2 Cluster: Lambda-crystallin homolog; n=30;
Coelomata|Rep: Lambda-crystallin homolog - Homo sapiens
(Human)
Length = 319
Score = 95.1 bits (226), Expect = 1e-18
Identities = 51/95 (53%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Frame = +2
Query: 56 MSEGLGMRYAFLGALETAHLNAEGMQSYIDRYGETIYRVSNEMGPAP---RMTTNKSRNS 226
MSEGLGMRYAF+G LET HLNAEGM SY DRY E I V GP P R T K
Sbjct: 224 MSEGLGMRYAFIGPLETMHLNAEGMLSYCDRYSEGIKHVLQTFGPIPEFSRATAEKVNQD 283
Query: 227 VCEQLEKLVPIEKLQDRRNWRDLCLMRLSLLKKEM 331
+C ++ E L RR WRD CLMRL+ LK ++
Sbjct: 284 MCMKVPD--DPEHLAARRQWRDECLMRLAKLKSQV 316
>UniRef50_Q1RLR0 Cluster: LOC570274 protein; n=4; Clupeocephala|Rep:
LOC570274 protein - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 327
Score = 79.0 bits (186), Expect = 7e-14
Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Frame = +2
Query: 56 MSEGLGMRYAFLGALETAHLNA-EGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVC 232
MSEGLGMRYAF+G +ET HLNA EGM+ Y+ RY E + RV N GP P + + V
Sbjct: 236 MSEGLGMRYAFIGPIETMHLNAPEGMKDYLQRYSEGMKRVLNTFGPVPDFSGEPAAR-VI 294
Query: 233 EQLEKLVPIEK--LQDRRNWRDLCLMRLSLLKK 325
+++ +++P E+ L RR RD LM L+ LK+
Sbjct: 295 KEICEMIPGEQEHLSARRERRDQLLMGLAKLKE 327
>UniRef50_A7SBT1 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 322
Score = 75.4 bits (177), Expect = 9e-13
Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = +2
Query: 56 MSEGLGMRYAFLGALETAHLNAEGMQSYIDRYGETIYR-VSNEMGPAPRMTTNKSRNSVC 232
M+EGLG+RY+ +G ET HLNA+G++ Y RYG+ I+ V N P+P T + ++V
Sbjct: 228 MTEGLGLRYSLIGPFETMHLNADGIRDYCQRYGDNIHHIVKNSTIPSP--LTGATLDTVE 285
Query: 233 EQLEKLVPIEKLQDRRNWRDLCLMRLSLLKKE 328
E L + +P++KL DRR RD L L++ + +
Sbjct: 286 EDLCQTMPLDKLSDRRALRDRRLAALAVFRAQ 317
>UniRef50_A5A8P0 Cluster: Putative uncharacterized protein; n=3;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 284
Score = 72.5 bits (170), Expect = 6e-12
Identities = 38/93 (40%), Positives = 53/93 (56%)
Frame = +2
Query: 56 MSEGLGMRYAFLGALETAHLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCE 235
MS GLG RYAF G ET HLNA G++ Y RY I V +MGP P T K N + E
Sbjct: 191 MSAGLGPRYAFNGTCETVHLNAFGVRDYFKRYAAGITAVLKDMGPIPDFTDEKVINKLEE 250
Query: 236 QLEKLVPIEKLQDRRNWRDLCLMRLSLLKKEMN 334
+LE + ++ + R+ L+ ++ LKK++N
Sbjct: 251 ELEPKMSTLNIRKHQAEREEKLVEIAKLKKDLN 283
>UniRef50_Q0FUQ2 Cluster: 3-hydroxybutyryl-CoA dehydrogenase; n=2;
Alphaproteobacteria|Rep: 3-hydroxybutyryl-CoA
dehydrogenase - Roseovarius sp. HTCC2601
Length = 316
Score = 53.2 bits (122), Expect = 4e-06
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +2
Query: 56 MSEGLGMRYAFLGALETAHLNAE-GMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVC 232
+SEG G+R+AFLG E LNA G++ Y++RYG E G + ++ +++
Sbjct: 219 ISEGFGLRWAFLGPFEGVDLNAPGGIRQYLERYGFLARDRGREYGLGD-VLPPETIDTLD 277
Query: 233 EQLEKLVPIEKLQDRRNWRDLCLMRLSLLKKE 328
+ +P+E L ++ WRD ++ L LK E
Sbjct: 278 DYARSRIPLEALPEKVAWRDESILALRALKAE 309
>UniRef50_Q7WLK3 Cluster: Putative 3-hydroxyacyl-CoA dehydrogenase;
n=3; Bordetella|Rep: Putative 3-hydroxyacyl-CoA
dehydrogenase - Bordetella bronchiseptica (Alcaligenes
bronchisepticus)
Length = 313
Score = 50.8 bits (116), Expect = 2e-05
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Frame = +2
Query: 56 MSEGLGMRYAFLGALETAHLNAE-GMQSYIDRYGETIYRVSNEMG-PAPRMTTNKSRNSV 229
+S+GLG+R+A LG LE LNA G+ Y+ RYG ++ G PAP + +++
Sbjct: 217 ISQGLGLRWATLGPLEGVDLNAPGGIADYLQRYGHIFNDMAVGQGLPAP--VDAELISAL 274
Query: 230 CEQLEKLVPIEKLQDRRNWRD 292
+ +P+E+L+ +R WRD
Sbjct: 275 DGAMRAALPLERLEAKRGWRD 295
>UniRef50_Q98LG2 Cluster: Mll1034 protein; n=5;
Alphaproteobacteria|Rep: Mll1034 protein - Rhizobium
loti (Mesorhizobium loti)
Length = 315
Score = 50.0 bits (114), Expect = 4e-05
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Frame = +2
Query: 62 EGLGMRYAFLGALETAHLNAE-GMQSYIDRYGETIYRVSNEMGPAPRMT--TNKSRNSVC 232
+GL +R++F+G ET LNA G++ Y+DRY + IY SN R + +V
Sbjct: 220 DGLALRWSFMGPFETIDLNAPGGVRDYVDRY-QGIY--SNIFPQMLRRVDWAGEVMATVE 276
Query: 233 EQLEKLVPIEKLQDRRNWRDLCLMRLSLLKKEMNKKY 343
+ K +P L DR+ WRD LM L+ KK+ ++++
Sbjct: 277 AERSKRLPRGSLGDRQVWRDRRLMALAAHKKKSDQEF 313
>UniRef50_Q11EZ3 Cluster: 3-hydroxyacyl-CoA dehydrogenase,
NAD-binding precursor; n=3; Bacteria|Rep:
3-hydroxyacyl-CoA dehydrogenase, NAD-binding precursor -
Mesorhizobium sp. (strain BNC1)
Length = 318
Score = 48.4 bits (110), Expect = 1e-04
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +2
Query: 56 MSEGLGMRYAFLGALETAHLNAE-GMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVC 232
M GLG R++ +G ETA LN G+ S+ ++ G R+ E G T + + V
Sbjct: 226 MRSGLGRRWSVIGPFETADLNTRGGIASHAEKMGPAYARMGAERGQNDPWTPDLV-DEVT 284
Query: 233 EQLEKLVPIEKLQDRRNWRDLCLMRLSLLKKEMNK 337
Q +++P+++ + R WRD L++ + L +++N+
Sbjct: 285 RQRREIMPLDQWEARVRWRDEQLLK-AKLARDLNR 318
>UniRef50_Q2CEL4 Cluster: 3-hydroxybutyryl-CoA dehydrogenase; n=2;
Rhodobacteraceae|Rep: 3-hydroxybutyryl-CoA dehydrogenase
- Oceanicola granulosus HTCC2516
Length = 312
Score = 46.4 bits (105), Expect = 5e-04
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Frame = +2
Query: 56 MSEGLGMRYAFLGALETAHLNAE-GMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVC 232
M +GL R+ FLG ET LNA G+ ++DRYG + + PR ++
Sbjct: 218 MRDGLARRWTFLGPFETIDLNAPGGIGDFMDRYGPAYAAIGTQRPTRPRWD-----GTLR 272
Query: 233 EQLEKLVPIEKL--QDRRNWRDLCLMRLSLL 319
E+L + + RR WRD CL RL+ L
Sbjct: 273 ERLVQYASGQSSTHDARRAWRDRCLARLARL 303
>UniRef50_Q6SEY0 Cluster: 3-hydroxyacyl-CoA dehydrogenase domain
protein; n=1; uncultured bacterium 582|Rep:
3-hydroxyacyl-CoA dehydrogenase domain protein -
uncultured bacterium 582
Length = 322
Score = 46.0 bits (104), Expect = 6e-04
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +2
Query: 62 EGLGMRYAFLGALETAHLNAE-GMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCEQ 238
+GLG+R++F+G ET LNA G+ Y RYG +YR + AP ++ + +
Sbjct: 231 DGLGLRWSFMGPFETIDLNAPGGLADYAKRYG-PMYRDMAQDQAAPADWAEEAMTPLHDA 289
Query: 239 LEKLVPIEKLQDRRNWRDLCLMRLSLLKKE 328
+ I+ + R WRD L L+ K++
Sbjct: 290 RRAELSIDAVASRHFWRDSRLAALAAHKQK 319
>UniRef50_A1FMQ0 Cluster: 3-hydroxyacyl-CoA dehydrogenase,
NAD-binding; n=3; Proteobacteria|Rep: 3-hydroxyacyl-CoA
dehydrogenase, NAD-binding - Pseudomonas putida W619
Length = 320
Score = 43.2 bits (97), Expect = 0.004
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = +2
Query: 56 MSEGLGMRYAFLGALETAHLNA-EGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVC 232
+ +GL +R++F+G ET LNA G+ Y RYG+ N + +R V
Sbjct: 227 LKDGLALRWSFMGPFETIDLNAPAGVSDYAKRYGQQNRETINSENAFDWSESAVAR--VH 284
Query: 233 EQLEKLVPIEKLQDRRNWRDLCLMRLSLLKKE 328
++ + + +E + R WRD LM L+ K++
Sbjct: 285 DERRQKLELEGIALRSAWRDRRLMALAAHKRQ 316
>UniRef50_A5G288 Cluster: 3-hydroxyacyl-CoA dehydrogenase,
NAD-binding precursor; n=2; Proteobacteria|Rep:
3-hydroxyacyl-CoA dehydrogenase, NAD-binding precursor -
Acidiphilium cryptum (strain JF-5)
Length = 312
Score = 41.9 bits (94), Expect = 0.010
Identities = 28/90 (31%), Positives = 41/90 (45%)
Frame = +2
Query: 56 MSEGLGMRYAFLGALETAHLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCE 235
+S GLG+R++F+G ET LNA G + R T+Y + V
Sbjct: 215 VSAGLGLRWSFMGPFETIDLNAPGGVADYARRFRTMYETIAGSRGVDLGWDDALIAEVER 274
Query: 236 QLEKLVPIEKLQDRRNWRDLCLMRLSLLKK 325
Q +P ++L +R WRD LM L K+
Sbjct: 275 QRRVALPADQLAERSAWRDRRLMALMAHKR 304
>UniRef50_Q160J3 Cluster: Putative 3-hydroxyacyl-CoA dehydrogenase;
n=1; Roseobacter denitrificans OCh 114|Rep: Putative
3-hydroxyacyl-CoA dehydrogenase - Roseobacter
denitrificans (strain ATCC 33942 / OCh 114)
(Erythrobactersp. (strain OCh 114)) (Roseobacter
denitrificans)
Length = 331
Score = 41.5 bits (93), Expect = 0.013
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +2
Query: 56 MSEGLGMRYAFLGALETAHLNAE-GMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVC 232
+S+GLG+R++ +G ET HLNA G+ Y+ R+G +YR P P +
Sbjct: 233 ISDGLGLRWSLMGPFETIHLNAPGGVSDYVRRFG-PMYRDMFADDPDPVDWETVVDAGLE 291
Query: 233 EQLEKLVPIEKLQDRRNWRDLCLMRL 310
L P+ + + RD L+R+
Sbjct: 292 ADLTASQPLSGISAAQKTRDSALLRM 317
>UniRef50_A1B801 Cluster: 3-hydroxyacyl-CoA dehydrogenase,
NAD-binding; n=2; Rhodobacteraceae|Rep:
3-hydroxyacyl-CoA dehydrogenase, NAD-binding -
Paracoccus denitrificans (strain Pd 1222)
Length = 311
Score = 38.7 bits (86), Expect = 0.095
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +2
Query: 65 GLGMRYAFLGALETAHLNAE-GMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCEQL 241
GLG R+AF+G +ET +LNA G Y+ RYG + ++ + T ++ V
Sbjct: 220 GLGRRWAFMGPMETINLNAPGGAGDYLARYGRMMAGLA-KTSARDEAFTAQAAAIVGSAF 278
Query: 242 EKLVPIEKLQDRRNWRD 292
+ ++ R++WRD
Sbjct: 279 PDTATPQAIRARQDWRD 295
>UniRef50_Q93QG7 Cluster: Hydroxyacyl-CoA dehydrogenase; n=1;
Brevibacterium sp. HCU|Rep: Hydroxyacyl-CoA
dehydrogenase - Brevibacterium sp. HCU
Length = 316
Score = 37.1 bits (82), Expect = 0.29
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 56 MSEGLGMRYAFLGALETAHLNAE-GMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVC 232
+ +GLG+R++ G T LN G+ ++ +R G +R++ + + T C
Sbjct: 219 VQDGLGLRWSVAGPFATVDLNVRGGITAHAERMGSAYHRMAGALDTSKEWTDTLVAKVNC 278
Query: 233 EQLEKLVPIEKLQDRRNWRDLCLMR 307
+ K VP+E+ RD LM+
Sbjct: 279 SR-RKAVPLEQWDQAVADRDTQLMK 302
>UniRef50_A3VGB5 Cluster: 3-hydroxybutyryl-CoA dehydrogenase; n=2;
Rhodobacterales|Rep: 3-hydroxybutyryl-CoA dehydrogenase
- Rhodobacterales bacterium HTCC2654
Length = 324
Score = 37.1 bits (82), Expect = 0.29
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +2
Query: 56 MSEGLGMRYAFLGALETAHLNA-EGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVC 232
M+ GL +R+A +G TAHLNA EG ++ + + + +MG R + + V
Sbjct: 218 MTSGLALRWASIGPFMTAHLNAHEGFAGFVGQ----LEGMMKKMGADARTDYDWGPDLVA 273
Query: 233 ---EQLEKLVPIEKLQDRRNWRD 292
+++ + P+ + D ++WRD
Sbjct: 274 KINDEMTRRQPVGAIPDAQSWRD 296
>UniRef50_Q7RN38 Cluster: Putative uncharacterized protein PY01986;
n=4; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY01986 - Plasmodium yoelii yoelii
Length = 697
Score = 36.3 bits (80), Expect = 0.51
Identities = 26/86 (30%), Positives = 46/86 (53%)
Frame = +2
Query: 95 ALETAHLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCEQLEKLVPIEKLQD 274
A++ LN + + I+ E+I ++ E+ + T NK VC+++E + IEKL
Sbjct: 296 AVKQLKLNGKFENNQINDKRESIDNINIEIDE--QNTINKYSKDVCKEIEDIEEIEKLTS 353
Query: 275 RRNWRDLCLMRLSLLKKEMNKKYQSS 352
+N+ D +++LL+K KK SS
Sbjct: 354 -KNYNDTQKEQVNLLEKNKLKKIFSS 378
>UniRef50_Q6CTU7 Cluster: Similar to sgd|S0006086 Saccharomyces
cerevisiae YPL165c; n=1; Kluyveromyces lactis|Rep:
Similar to sgd|S0006086 Saccharomyces cerevisiae YPL165c
- Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 367
Score = 33.9 bits (74), Expect = 2.7
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +2
Query: 206 TNKSRNSVCEQLEKLVPIEKLQDRRNWRDLCLMRLSLLKKEMNKKYQSS*CVFHDNAFKN 385
+++ R VC K + ++ R +W DL + L+LL ++ KKY+ S F KN
Sbjct: 47 SHEFRKEVCHFCLKYDGGKPMKVRISWADLLKLDLNLLNHKLEKKYKGSGLWFCTEECKN 106
Query: 386 IFI 394
F+
Sbjct: 107 FFL 109
>UniRef50_Q7RPE8 Cluster: Aspartyl-tRNA synthetase, putative; n=7;
Plasmodium|Rep: Aspartyl-tRNA synthetase, putative -
Plasmodium yoelii yoelii
Length = 681
Score = 33.5 bits (73), Expect = 3.6
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = +2
Query: 98 LETAHLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCEQLEKLVPIEKLQDR 277
+ T L E + + + + + + +P++ NS +++ ++ P+ + ++
Sbjct: 391 IHTPKLLGESSEGGANAFQINYFNQNGFLAQSPQLYKQMCINSGFDRVFEIAPVFRAENS 450
Query: 278 RNWRDLCLMRLSLLKKEMNKKYQSS*CV-FHDNAFKNIF 391
+R LC L EM KY V F+D+ FKNIF
Sbjct: 451 NTYRHLC--EYVSLDVEMTYKYDYMENVYFYDSMFKNIF 487
>UniRef50_A0D6L1 Cluster: Chromosome undetermined scaffold_4, whole
genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_4, whole genome shotgun
sequence - Paramecium tetraurelia
Length = 1175
Score = 32.7 bits (71), Expect = 6.2
Identities = 26/79 (32%), Positives = 44/79 (55%)
Frame = +2
Query: 233 EQLEKLVPIEKLQDRRNWRDLCLMRLSLLKKEMNKKYQSS*CVFHDNAFKNIFIV*NILF 412
+Q ++LV I QD+ N +C+++ LL+ E+ + Q ++N FK + NILF
Sbjct: 785 QQNDELVQIH--QDQNN--QICILKSQLLQLEIITQKQKEQINQYENEFKKVLKDDNILF 840
Query: 413 QC*IIFYYCRWFHEPSSTK 469
Q I R ++EP++TK
Sbjct: 841 QQKQI--DLRDYNEPTTTK 857
>UniRef50_A6LPC7 Cluster: Sensor protein; n=1; Clostridium
beijerinckii NCIMB 8052|Rep: Sensor protein -
Clostridium beijerinckii NCIMB 8052
Length = 315
Score = 32.3 bits (70), Expect = 8.2
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +2
Query: 221 NSVCEQLEKLVPIEKLQDRRNWRDLCL 301
NS CE + KL PIE+LQD N RD CL
Sbjct: 272 NSGCEFIIKL-PIERLQDDENNRDKCL 297
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 542,709,089
Number of Sequences: 1657284
Number of extensions: 10310615
Number of successful extensions: 22462
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 21928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22450
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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