Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0108
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    27   1.5  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   2.6  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   3.4  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    26   4.5  

>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 445 PSTI-IKNDLTLEKYISNYKNVFKCVVMKYTSRTLVFLVHFFLE 317
           PS + ++ND + +K  SN  +VF+   +KY   T ++LV   L+
Sbjct: 366 PSVLSMENDFSTKKMSSNIGHVFQNETVKYVFPTPLYLVSDILQ 409


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = +2

Query: 116 NAEGMQSYIDRYGETIYRVSNEMGPAPR--MTTNKSRNSVCEQLEKLVPIEKLQDRRNWR 289
           N+E ++S +D   + I ++ NE+    R  +    S  ++ E+ +K   I+KL D  + +
Sbjct: 370 NSESLKSRVDNLNDYITKLQNEIDECRRNLLWAESSCETIREENQK--NIKKLNDAESLK 427

Query: 290 DLCLMRLSLLKKEMNKKYQSS 352
              L   + ++ E++    S+
Sbjct: 428 SRLLQSRTQMQTELDSYITSN 448


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 79  SHSKSFRHNFINIRYINNFVVNERQT 2
           +H      NF+NI  I++F++++ QT
Sbjct: 345 NHKLEILQNFVNIAPISDFIIDDDQT 370


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 110 HLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCEQLEKLVPI 259
           H   +  Q+Y+    E + R+ NE+    R+ T+     V ++ E  V I
Sbjct: 123 HRQLQTAQNYLTEMKEALGRIKNELSTNERLDTSAREALVKQESELTVKI 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,121
Number of Sequences: 5004
Number of extensions: 48787
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)