Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0108
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14586| Best HMM Match : 3HCDH (HMM E-Value=0.0029)                  75   3e-14
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)                       30   1.5  
SB_19419| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_2419| Best HMM Match : RPEL (HMM E-Value=5.8)                       29   2.7  
SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31)                   28   4.7  
SB_44933| Best HMM Match : zf-TRAF (HMM E-Value=2.4e-25)               27   8.2  

>SB_14586| Best HMM Match : 3HCDH (HMM E-Value=0.0029)
          Length = 107

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
 Frame = +2

Query: 56  MSEGLGMRYAFLGALETAHLNAEGMQSYIDRYGETIYR-VSNEMGPAPRMTTNKSRNSVC 232
           M+EGLG+RY+ +G  ET HLNA+G++ Y  RYG+ I+  V N   P+P   T  + ++V 
Sbjct: 13  MTEGLGLRYSLIGPFETMHLNADGIRDYCQRYGDNIHHIVKNSTIPSP--LTGATLDTVE 70

Query: 233 EQLEKLVPIEKLQDRRNWRDLCLMRLSLLKKE 328
           E L + +P++KL DRR  RD  L  L++ + +
Sbjct: 71  EDLCQTMPLDKLSDRRALRDRRLAALAVFRAQ 102


>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
          Length = 346

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -3

Query: 247 LLQLFAHRVSAFICRHTRSRSHFIADTINCLSVSINITLHAFSIQMGCF*STQKCISHSK 68
           ++QL  H +     R+T    H I  T+ CLS+ + +    F I+M C  +   C   S+
Sbjct: 68  VVQLLTHGLQKTHLRYTIDNLHQIMVTLCCLSLDLRLQSIMFDIEM-CILALLDCFGESQ 126


>SB_19419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -3

Query: 247 LLQLFAHRVSAFICRHTRSRSHFIADTINCLSVSINITLHAFSIQMGCF*STQKCISHSK 68
           ++QL  H +     R+T    H I  T+ CLS+ + +    F I+M C  +   C   S+
Sbjct: 68  VVQLLTHGLQKTHLRYTIDNLHQIMVTLCCLSLDLRLQSIMFDIEM-CILALLDCFGESQ 126


>SB_2419| Best HMM Match : RPEL (HMM E-Value=5.8)
          Length = 116

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = +2

Query: 194 PRMTTNKSRNSVCEQLEKLVPIEKLQDRRNWRDLCLMRLSLLKK 325
           P   + + R+++C++LEK +  E+  + R +R+L L+   LLK+
Sbjct: 70  PTSASQRRRSAICDELEKRIYCEQGANLRKFREL-LVTQRLLKE 112


>SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 445 PSTIIKNDLTLEKYISNYKNVFKCVVMKY 359
           PST   ND  ++ YI N KNV   V+++Y
Sbjct: 321 PSTNALNDAVMQIYIINAKNVTSRVLLRY 349


>SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31)
          Length = 396

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +1

Query: 154 RDNLSCQQ*NGTGSA 198
           RDNLSC++ NGTG+A
Sbjct: 317 RDNLSCRRRNGTGAA 331


>SB_44933| Best HMM Match : zf-TRAF (HMM E-Value=2.4e-25)
          Length = 462

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 149 YGETIYRVSNEMGPAPRMTTNKSRNSVCEQ 238
           YGE I+RVSN      R+ T +  + VC +
Sbjct: 301 YGELIWRVSNFNKKVARIRTGRGDDPVCSE 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,104,814
Number of Sequences: 59808
Number of extensions: 326800
Number of successful extensions: 792
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)