Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0108
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...   103   9e-25
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.1  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   2.1  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score =  103 bits (248), Expect = 9e-25
 Identities = 49/92 (53%), Positives = 63/92 (68%)
 Frame = +2

Query: 56  MSEGLGMRYAFLGALETAHLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCE 235
           MSEGLGMRYAFLGA E AHLNAEGM+ Y + Y  +IY VS   GP P+    +    +  
Sbjct: 39  MSEGLGMRYAFLGAFEAAHLNAEGMKKYCETYKNSIYDVSMTFGPVPKF-EGEMAEKISN 97

Query: 236 QLEKLVPIEKLQDRRNWRDLCLMRLSLLKKEM 331
           +L ++ P+EKL++RR WRD  L +LSLLKK +
Sbjct: 98  ELNEMCPLEKLKERRIWRDDALTKLSLLKKRI 129


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 76  HSKSFRHNFINIRYINNFVVN 14
           H     HN++N   ++ FVVN
Sbjct: 527 HEVDLVHNYMNFMQMDEFVVN 547


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 76  HSKSFRHNFINIRYINNFVVN 14
           H     HN++N   ++ FVVN
Sbjct: 527 HEVDLVHNYMNFMQMDEFVVN 547


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 242  PIVRTPSFCFYLSSYAEPVPFHC 174
            P+V   S C  + + ++P  FHC
Sbjct: 1707 PVVSCASGCTAVETKSKPYKFHC 1729


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 76  HSKSFRHNFINIRYINNFVVN 14
           H     HN++N   ++ FVVN
Sbjct: 153 HEVDLVHNYMNFMQMDEFVVN 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,936
Number of Sequences: 438
Number of extensions: 3574
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)