Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0108
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44030.1 68414.m05079 DC1 domain-containing protein contains ...    28   5.0  
At5g02950.1 68418.m00238 PWWP domain-containing protein predicte...    27   8.8  
At4g02540.1 68417.m00347 DC1 domain-containing protein contains ...    27   8.8  
At2g32440.1 68415.m03963 ent-kaurenoic acid hydroxylase, putativ...    27   8.8  

>At1g44030.1 68414.m05079 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 597

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 146 YQYNFACLQHSNGLFLEHPKMH 81
           Y  N AC +    LF++HPK H
Sbjct: 393 YAMNIACAEKPPVLFIDHPKWH 414


>At5g02950.1 68418.m00238 PWWP domain-containing protein predicted
           protein, Arabidopsis thaliana
          Length = 632

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 347 SGISCSFLS*GVTDALNKDRANYDDLEVF 261
           S +  +  S G+ D++N D +NY+D E F
Sbjct: 455 SSLHAANTSTGIPDSINIDPSNYEDFEKF 483


>At4g02540.1 68417.m00347 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 822

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 146 YQYNFACLQHSNGLFLEHPKMH 81
           +  NFAC+Q    L + HPK H
Sbjct: 367 FAVNFACVQKPPELSMHHPKWH 388


>At2g32440.1 68415.m03963 ent-kaurenoic acid hydroxylase, putative /
           cytochrome P450, putative identical to ent-kaurenoic
           acid hydroxylase / cytochrome P450 CYP88A (GI:13021856)
           [Arabidopsis thaliana]; similar to ent-kaurenoic acid
           hydroxylase [Arabidopsis thaliana] GI:13021853
          Length = 489

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 68  LGMRYAFLGALETAHLNAEGMQSYIDRYGET-IYRVSNEMGPAPRMTT 208
           +G  ++FL A +T+   +  +QSYI RYG T IY+      P   +TT
Sbjct: 54  IGNMWSFLRAFKTSDPESF-IQSYITRYGRTGIYKAHMFGYPCVLVTT 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,962,168
Number of Sequences: 28952
Number of extensions: 234378
Number of successful extensions: 466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)