Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0106
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    28   0.63 
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   2.6  
SPBC16E9.15 |||heat shock factor binding protein |Schizosaccharo...    25   3.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   3.4  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   5.9  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    24   7.8  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    24   7.8  
SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr...    24   7.8  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 0.63
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 185 GDFSVIDTEFSS-IRERFDAEMRKMEEEMSK 274
           G F+ +D+E    IRE  +AE++KMEE+  K
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEKAPK 498


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -2

Query: 141 FHVICRVEIVETKQTLKRSRVNTFHWNNTHSTADKTVLIP 22
           F  IC  + V T    +  ++  + WN+T + + ++ +IP
Sbjct: 84  FTYICDYDAVYTDHLCEADQLGLYLWNSTSAKSIRSYIIP 123


>SPBC16E9.15 |||heat shock factor binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 75

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 185 GDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESN 307
           GDF  +  +FS   E     + ++EE M     E MN++S+
Sbjct: 31  GDFETLQKQFSEKLETMSTRLDQLEESM----REAMNKKSS 67


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 166  KYPHQAWRFFGYRY 207
            +YP  AW+FF  RY
Sbjct: 1511 RYPEDAWKFFMVRY 1524


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = +2

Query: 152 SGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNN 310
           S L+  +  KL +  ++  +      +  +   K+EE +SK+ + + ++E NN
Sbjct: 383 SSLRIELEDKLAEIDMLRNKLLKEEHKHHSTSEKLEE-LSKYVASIQDKERNN 434


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 195 EKSPSLMGIFLLRPLSAIFHVICRVEIVETKQTLKRSRVNTFHWNNTHS 49
           +KS  ++G F     S++  V     I+E+  +L R   N+F +NN  S
Sbjct: 30  QKSSKIVGSFTNSQNSSVGSV--HSPILESPTSLNRQHRNSFSFNNVSS 76


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 200 IDTEFSSIRERFDAEMRK 253
           ++ E + +RER D EMRK
Sbjct: 349 LEQELNFLRERIDVEMRK 366


>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 112

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +2

Query: 140 KMADSGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRES 304
           ++ D G  + +   LG    + ++ +S+R   DAEM  + E++   + +    E+
Sbjct: 42  ELEDVGEDKAVYTSLGKM-FMKSDLASVRTHLDAEMASLREDIEALQKKQTYHET 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,409,499
Number of Sequences: 5004
Number of extensions: 24737
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)