Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0106
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 31 0.35
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65... 31 0.46
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820... 29 1.8
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 28 2.4
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 28 3.2
11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067 27 4.3
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735... 27 4.3
01_01_0057 - 435295-435731,435866-435914,436041-436437,437807-43... 26 9.9
>01_06_1201 - 35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 31.1 bits (67), Expect = 0.35
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 163 EKYPHQA---WRFFGYRYRILKHQRALRCRNEEDGRRNEQIQIRTHEQRKQQFLQE 321
EKYP A RF G+R R+L + L E+G I +E+RK +FL+E
Sbjct: 1213 EKYPVMAELIHRFQGFRERLLADPKFLHRLAIEEGISITTTLIAQYEKRKGRFLEE 1268
>03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-653886,
654027-654247,654395-654533,654628-654710,654824-655036,
655099-655494,655587-655758,656085-656276,656363-656569,
656661-656753,656957-657156,657329-657838,658114-658184,
658322-658963,659057-659207,659425-659665
Length = 1360
Score = 30.7 bits (66), Expect = 0.46
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -2
Query: 210 SVSITEKSPSLMGIFLLRPLSAIFHVICRVEI-VETKQTLKRSRVNTFHWNNTH 52
S+ I+ S ++ ++L+P A IC + V++KQ+LK TF W +TH
Sbjct: 884 SLLISVGSKQVLTTWVLQPKVAENRHICSSGLDVDSKQSLKGDSAMTFQWLSTH 937
>07_03_0943 -
22778877-22780970,22781376-22781480,22781481-22782059,
22782149-22782187,22782340-22782372
Length = 949
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 211 ILKHQRALRCRNEEDGRRNEQIQIRTH 291
+ K +R + C+NE GRRN R H
Sbjct: 629 VAKRRRLVSCKNERTGRRNTAANKRQH 655
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 28.3 bits (60), Expect = 2.4
Identities = 9/31 (29%), Positives = 24/31 (77%)
Frame = +2
Query: 197 VIDTEFSSIRERFDAEMRKMEEEMSKFRSEL 289
V DTE ++ +E+F+A+++K +++ ++R ++
Sbjct: 18 VYDTENANQKEKFEADLKKEIKKLQRYRDQI 48
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 205 YRILKHQRALRCRNEEDGRRNEQIQIRTHEQRK 303
Y L+ QR R R EE+ R+ E+ + R +RK
Sbjct: 837 YLNLEEQRLQRLREEEEARKQEERRKREETERK 869
>11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067
Length = 472
Score = 27.5 bits (58), Expect = 4.3
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 21 EGSVL-SCQPSSAYYSSETCLRENVSVFV*FLQFPRGK*REKWLTVVSREISPSS 182
+GSV+ SC +S YY S + L+ + V V LQ E+ L + R +SPSS
Sbjct: 239 KGSVIVSCDTTSMYYKSLSTLQSLLLVCVKKLQPKLVVTIEEDLVRIGRGVSPSS 293
>07_01_0886 -
7356591-7356662,7357002-7357079,7357373-7357444,
7357511-7357600,7357669-7357783,7358509-7358639,
7358717-7358992,7360147-7360283,7360368-7360502,
7360958-7361325,7362111-7362229,7362295-7362339
Length = 545
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 146 ADSGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEE 265
A S + ++P+ L D S +E S++R DA K EE+
Sbjct: 52 ASSSRRSSVPLPLPDPSSSRSETSAVRSEGDAAEEKSEEQ 91
>01_01_0057 -
435295-435731,435866-435914,436041-436437,437807-437906,
438316-438388,439322-439528
Length = 420
Score = 26.2 bits (55), Expect = 9.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 24 GSVLSCQPSSAYYSSETCLRENVSVFV*FLQFPRGK*REKWLTVVSRE 167
G++ S SA+Y + N+ + + FL+ R K REK L+ + E
Sbjct: 149 GTLASRHIFSAHYFRYSSKNSNIPLSIFFLRHAREKVREKELSPIGEE 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,735,614
Number of Sequences: 37544
Number of extensions: 145415
Number of successful extensions: 436
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -