Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0106
(406 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.27
SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_15952| Best HMM Match : TPR_1 (HMM E-Value=5.8e-11) 29 1.9
SB_16838| Best HMM Match : TolA (HMM E-Value=2) 28 2.5
SB_26015| Best HMM Match : ANATO (HMM E-Value=3.2) 28 2.5
SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07) 28 3.3
SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23) 28 3.3
SB_45590| Best HMM Match : Syntaxin (HMM E-Value=0.61) 27 5.8
SB_8330| Best HMM Match : Spb1_C (HMM E-Value=5.3) 27 5.8
SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_25665| Best HMM Match : TolA (HMM E-Value=1.7) 27 5.8
>SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 31.5 bits (68), Expect = 0.27
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +2
Query: 200 IDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNNFFKXXXXXXXXXQHSDSRQL 370
++ E SS+RE DA RKM ++SK +L +E+N + QHSD+ +L
Sbjct: 255 LEKEISSLREIVDARERKM-VQLSKDNIDL--QETNAILRSQLEQLESMQHSDNAEL 308
>SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 901
Score = 29.5 bits (63), Expect = 1.1
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 154 WSQEKYPHQAWRFFGYRY-RILKHQRALRCRNEEDGRRNEQIQI-RTHEQRKQQFLQE 321
W Q+ PH GYRY + +KH + R R + Q+QI R E+RKQ L +
Sbjct: 127 WQQKYGPHYKKLDLGYRYLKRIKHVSFDQIRE----RASAQLQIERERERRKQDLLMK 180
>SB_15952| Best HMM Match : TPR_1 (HMM E-Value=5.8e-11)
Length = 672
Score = 28.7 bits (61), Expect = 1.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 155 GLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRES 304
G K+N K S D+ S++ FD+E K+ E FR++ NR+S
Sbjct: 52 GKKKNGAAKGKIVSKSDSLRSALSFDFDSETEKIRREYEVFRAQQANRDS 101
>SB_16838| Best HMM Match : TolA (HMM E-Value=2)
Length = 371
Score = 28.3 bits (60), Expect = 2.5
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 127 ANNVKNG*QWSQEKYPHQAWRFFGYRYRIL-KHQRALRCRNEEDGRRNEQIQIRTHEQRK 303
+ N N Q Q+K Q R + Y + K Q+ + R ++ +R +Q Q +QR+
Sbjct: 28 SRNNSNNVQLQQQKRQQQQKRTYNYDIQQQQKRQQQQQKRQQQKQKRQQQEQKLQQQQRR 87
Query: 304 QQ 309
QQ
Sbjct: 88 QQ 89
>SB_26015| Best HMM Match : ANATO (HMM E-Value=3.2)
Length = 474
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 183 SLMGIFLLRPLSAIFHVICRVEIVETKQTLKRSRVNTFHWNNTHSTADKT 34
SL GI LL + + I ++E +E + KR R + +W+ TH + T
Sbjct: 412 SLAGIVLLN--TQLLCCIVKLEKMEKGRAQKRKRKRSNYWDTTHQESTDT 459
>SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)
Length = 1127
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 181 AWRFFGYRYRILKHQRALRCRNEEDGRRNEQIQIRTHEQR 300
+WR G + +L+ + + CRN+ R EQI +R H R
Sbjct: 592 SWRL-GTSFFLLEDGKVI-CRNDYGDRDEEQIVLRVHHMR 629
>SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23)
Length = 1024
Score = 27.9 bits (59), Expect = 3.3
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +2
Query: 119 STRQIT*KMADSGLKRNIPIK----LGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSE 286
S R+I K DS KR I + + DF V E S+ + D EMRK + + + +
Sbjct: 551 SNREIQEKQEDSE-KRLIDLPPTPDIMDFKVKSAEIKSLAKSVDNEMRKFQVQQANEHIK 609
Query: 287 LMN 295
++N
Sbjct: 610 MLN 612
>SB_45590| Best HMM Match : Syntaxin (HMM E-Value=0.61)
Length = 315
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 218 SIRERFDAEMRKMEEEMSKFRSELMN 295
S RE+ +AE ++ EM + RS++MN
Sbjct: 78 STREKLEAEHTQVNREMVELRSKIMN 103
>SB_8330| Best HMM Match : Spb1_C (HMM E-Value=5.3)
Length = 230
Score = 27.1 bits (57), Expect = 5.8
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 161 KRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSE 286
K N I L D SS+RE+ A MRKM+ E + R+E
Sbjct: 139 KDNDNISLDDLKPFKVP-SSMREKMKAYMRKMKREALRRRAE 179
>SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 151 VSHFSRYLPRGNCRN*TNTETFSRKHVSLE 62
+SHFSR+LPR C++ TN + SLE
Sbjct: 203 LSHFSRWLPR-CCQSRTNVHVLVYERGSLE 231
>SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)
Length = 697
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 196 GYRYRILKHQRALRCRNEEDGRRNEQIQIRTHEQRKQQFLQEH 324
GY + + R R E+ +R +Q ++ H Q++QQ L H
Sbjct: 204 GYTEQWHQDNRERYDRREKAAQRQQQQHLQQHRQQQQQRLDRH 246
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,335,702
Number of Sequences: 59808
Number of extensions: 173461
Number of successful extensions: 623
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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