Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0106
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   4.0  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   5.3  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   5.3  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   5.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   5.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   5.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.0  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    20   9.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    20   9.3  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 165 LLRPLSAIFHVICRVEIVETKQTLKRSRVNTF 70
           L  PL+ I H  C   I  T+   + +R N F
Sbjct: 287 LEEPLTTIQHNNCLTRIPSTRINKQHTRGNNF 318


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = +2

Query: 200 IDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNNFFK 319
           +D  + +++    A M+K+ E+M+   S +  +   N+ K
Sbjct: 81  LDGWYQTLQSAISAHMKKVREQMAGILSRIPEQGVVNWNK 120


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = +2

Query: 200 IDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNNFFK 319
           +D  + +++    A M+K+ E+M+   S +  +   N+ K
Sbjct: 81  LDGWYQTLQSAISAHMKKVREQMAGILSRIPEQGVVNWNK 120


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = +2

Query: 200 IDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNNFFK 319
           +D  + +++    A M+K+ E+M+   S +  +   N+ K
Sbjct: 81  LDGWYQTLQSAISAHMKKVREQMAGILSRIPEQGVVNWNK 120


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 176 IKLGDFSVIDTEFSS 220
           I+ GD+ V++TE+SS
Sbjct: 379 IQNGDYVVLETEWSS 393


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 241 RNEEDGRRNEQIQIRTHEQRK 303
           +NE+  +  EQ++ R  EQR+
Sbjct: 61  KNEQQRKEMEQMREREREQRE 81


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 176 IKLGDFSVIDTEFSS 220
           I+ GD+ V++TE+SS
Sbjct: 85  IQNGDYVVLETEWSS 99


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 12/56 (21%), Positives = 30/56 (53%)
 Frame = +2

Query: 107 VSTISTRQIT*KMADSGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSK 274
           ++ +S    +  +  +G ++++ +KL     +D E    + + +  MRK++EEM +
Sbjct: 340 INDLSMHDFSRDLMLAGTQQSVELKLA----LDQEQLKSK-KLEESMRKLDEEMKR 390


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +2

Query: 176 IKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRES 304
           I  G   V+ T    +   FD   R+M  +  + +SE++ + +
Sbjct: 214 ISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKST 256


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +2

Query: 176 IKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRES 304
           I  G   V+ T    +   FD   R+M  +  + +SE++ + +
Sbjct: 214 ISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKST 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,207
Number of Sequences: 438
Number of extensions: 1758
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)