Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0106
         (406 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6...    29   1.6  
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta...    28   2.7  
At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR...    27   6.3  
At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR...    27   6.3  
At4g22970.1 68417.m03315 peptidase C50 family protein contains P...    27   6.3  
At4g15236.1 68417.m02335 ABC transporter family protein similar ...    27   6.3  
At1g65010.1 68414.m07368 expressed protein similar to endosome-a...    27   6.3  
At5g47900.1 68418.m05917 hypothetical protein                          26   8.3  
At2g29060.1 68415.m03532 scarecrow transcription factor family p...    26   8.3  
At1g25540.1 68414.m03171 phytochrome and flowering time regulato...    26   8.3  
At1g05590.1 68414.m00579 glycosyl hydrolase family 20 protein si...    26   8.3  

>At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6) /
           HD-ZIP transcription factor 6 identical to
           homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein
           ATHB-6) (SP:P46668) [Arabidopsis thaliana]
          Length = 311

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +2

Query: 188 DFSVIDTEFSSIRERFDAEMRKME---EEMSKFRSEL 289
           D+ V+ T++ S+R  FD+  R  E   +E+SK +++L
Sbjct: 122 DYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKL 158


>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 702

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 170 IPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKF 277
           IP++  D   +   F S+R   + +++ M++E +KF
Sbjct: 258 IPVRRTDDEPLQKLFMSVRSELNLDLKNMKQEQAKF 293


>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1298

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +2

Query: 89  RFSVCLVSTISTRQIT*KMADSGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEM 268
           R   CL + +  R I   +ADSGL  NI ++    +++D     +R     EM ++ +E 
Sbjct: 478 RLIACLFNHVKVRDIELLLADSGLDVNIALE----NLVDKSLIHVRND-HVEMHRLLQET 532

Query: 269 SK 274
            +
Sbjct: 533 GR 534


>At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1353

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +2

Query: 89  RFSVCLVSTISTRQIT*KMADSGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEM 268
           R   CL + +  R I   +ADSGL  NI ++    +++D     +R     EM ++ +E 
Sbjct: 439 RLIACLFNHVKVRDIELLLADSGLDVNIALE----NLVDKSLIHVRND-HVEMHRLLQET 493

Query: 269 SK 274
            +
Sbjct: 494 GR 495


>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
            PF03568: Peptidase family C50
          Length = 1773

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 144  WLTVVSREISPSSLAIFRLSIQNSQASESASMPK*GRWKKK 266
            W T V  E++P+  +I   S  +S  +E  ++   G W KK
Sbjct: 1359 WGTTVVDEVAPAFKSILEESHSSSSTTEEDTIESRGLWWKK 1399


>At4g15236.1 68417.m02335 ABC transporter family protein similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1388

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 23   GISTVLSAVECVLFQ*NVFTRERFS 97
            GI+   + + CV  + NVF RERFS
Sbjct: 1179 GINNCSTVIFCVATERNVFYRERFS 1203


>At1g65010.1 68414.m07368 expressed protein similar to
            endosome-associated protein (GI:1016368) [Homo sapiens];
            similar to Centromeric protein E (CENP-E protein)
            (Swiss-Prot:Q02224) [Homo sapiens]
          Length = 1318

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +2

Query: 209  EFSSIRERFDAEMRKMEEEMSKFRSELMNRES 304
            E   ++ER  A ++K+EE +SK + +L+N+E+
Sbjct: 908  EKEELKERETAYLKKIEE-LSKVQEDLLNKEN 938


>At5g47900.1 68418.m05917 hypothetical protein 
          Length = 384

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -2

Query: 216 ENSVSITEKS-PSLMGIFLLRPLSAIFHVICRVEIVETKQTLKRSRVNTFHWNNTHSTA 43
           E  +S+   S P    +FL   L     +ICR    E+K+ +K  R N     + H+TA
Sbjct: 27  EICISLRRSSIPVKRFLFLTLSLQRGLSLICRPIKRESKKEIKSLRANQVRIRSNHNTA 85


>At2g29060.1 68415.m03532 scarecrow transcription factor family
            protein 
          Length = 1336

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +2

Query: 167  NIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNN 310
            N P  +  F      +S++ + FD+ + +  +E  +F  E   RE+ N
Sbjct: 1208 NAPFFISRFKEAVYHYSALFDMFDSTLPRDNKERIRFEREFYGREAMN 1255


>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
           protein (PFT1) PMID: 12815435
          Length = 836

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/53 (20%), Positives = 30/53 (56%)
 Frame = +1

Query: 151 QWSQEKYPHQAWRFFGYRYRILKHQRALRCRNEEDGRRNEQIQIRTHEQRKQQ 309
           Q  Q++  HQ  +   ++   L+H +  + + ++  ++++  Q++ H Q++QQ
Sbjct: 716 QLQQQQQQHQQQQQQQHQLSQLQHHQQQQQQQQQQQQQHQLTQLQHHHQQQQQ 768


>At1g05590.1 68414.m00579 glycosyl hydrolase family 20 protein
           similar to beta-hexosaminidase precursor SP:P43077 from
           [Candida albicans]
          Length = 580

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 120 EIVETKQTLKRSRVNTFHWNNTHSTADKTVL 28
           +I+ T + +  +++N FHW+ T S +   VL
Sbjct: 189 DIMRTIKAMSANKLNVFHWHITDSQSFPLVL 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,218,185
Number of Sequences: 28952
Number of extensions: 124909
Number of successful extensions: 427
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)