Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0105
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.9  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   6.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.8  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.0  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -1

Query: 215 FCLKSTCLAVATSNVI 168
           FCL  T L VATS VI
Sbjct: 705 FCLSVTLLTVATSLVI 720


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 642 VCFLYLLHFTGYILFFML 589
           +CFLY+L +T Y +  M+
Sbjct: 279 ICFLYVLSWTPYGVMSMI 296


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 337 KKVQDIVNLEESKKQLQSDC 396
           K V +++  E S KQL SDC
Sbjct: 85  KAVMELLIDENSVKQLVSDC 104


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 126 LFGDRFNFLYIAVKHRHIP 70
           ++GD  NF ++A+ + H P
Sbjct: 360 VYGDLHNFGHVAISYIHDP 378


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 62  KYTGICRCLTAIYK 103
           ++TG+  CLT I+K
Sbjct: 155 EFTGLGNCLTKIFK 168


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 62  KYTGICRCLTAIYK 103
           ++TG+  CLT I+K
Sbjct: 155 EFTGLGNCLTKIFK 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.129    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,332
Number of Sequences: 438
Number of extensions: 3212
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)