Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0104
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 32 0.065
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 30 0.34
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 29 0.60
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 26 5.6
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 5.6
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 7.4
SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit... 25 9.8
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 9.8
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 9.8
SPCC1682.05c |||signal recognition particle subunit |Schizosacch... 25 9.8
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 32.3 bits (70), Expect = 0.065
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 12/130 (9%)
Frame = +3
Query: 135 ENKVDELPDLDNLLQCPVCYE-IPTGHIFQCNEGHNVCGRC----KVRLSVCPVCRALFF 299
+ K+ L LD+ L+C +C+E I C+ H C C +CP CRA
Sbjct: 14 QTKIPSLKGLDSSLRCLICHEYFRAPLITSCS--HTFCSFCIRDYLREHPMCPACRAPEQ 71
Query: 300 GTR---NYAMEELIANVRKLR----AFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGE 458
+R N +EE++ + + +R F V + +L + + A+DS S + E+ +
Sbjct: 72 ESRLRKNTILEEILESFKVIRPTLFEFLKVENVPKPVLQA-PETVIAQDSASGDEEWEDD 130
Query: 459 DENNDNQNSV 488
+N + S+
Sbjct: 131 LASNSSPASI 140
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 29.9 bits (64), Expect = 0.34
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 366 GGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVAP 497
G TRGL S SST +R S + + ED+ + Q++VV P
Sbjct: 24 GSSFTRGLKNSTLSSTSSRKSSDEKSRKSSEDKRSP-QSTVVQP 66
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 29.1 bits (62), Expect = 0.60
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 141 KVDELPDLDNLL-QCPVCYEIPTGHIFQCNEGHNVCGRC 254
K+D L + L+ +CP+C P + N H CG C
Sbjct: 863 KIDTLKSFEALITECPICCNEPIQNPLLLNCKHACCGDC 901
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 291 LFFGTRNYAMEELIANVRKLRAFKLGGKVTRGLLAS 398
LF GTRN + ++A ++ R + + + GLL +
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTN 147
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/60 (20%), Positives = 32/60 (53%)
Frame = +3
Query: 318 MEELIANVRKLRAFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVAP 497
++E I +++++ ++ G R + + S+ A+ DN LGE++++ + + + P
Sbjct: 254 IDEAIDRLKEVKRRRIEGFERRKMRREQNLSSDAKVEDQDNDSMLGENKSSVSTETALKP 313
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 7.4
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +3
Query: 138 NKVDELPDLDNLLQCPVCY 194
N + + + D+ ++CPVCY
Sbjct: 156 NNLQRIEEPDDFVECPVCY 174
>SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit
Arc21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 25.0 bits (52), Expect = 9.8
Identities = 19/48 (39%), Positives = 21/48 (43%)
Frame = +3
Query: 504 CKGLFRCLCCKNGNSIRLPAARLLNHLRYFHSPELLEGRAEGGEYLQA 647
C GLFR C I+ PA R L + F S L GR G Y A
Sbjct: 47 CIGLFRANCFFRNFEIKGPADRTLIYGTLFISECL--GRVNGLNYRDA 92
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 360 KLGGKVTRGLLASDSSSTPARDSG 431
+LGGK+ RG+ A S+T D G
Sbjct: 329 QLGGKIQRGIEAWGLSNTATSDEG 352
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 114 YIMSEIVENKVDELPDLDNLLQ--CPVCYEIPTGHIFQCNEGH 236
Y++S+ EN+V++ L L + + +E PTG+I C E H
Sbjct: 120 YLLSKKSENEVEQRL-LKALAEKTAKLIFEKPTGYIDSCEEFH 161
>SPCC1682.05c |||signal recognition particle subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +3
Query: 525 LCCKNGNSIRLPAARLLNHLRYFHSPELLEGRA----EGGEYLQ 644
LC KNG L + + ++ P LLE R+ EG EY++
Sbjct: 38 LCLKNGTGEVLFSGLIKQMANFYIFPLLLEARSDHFYEGNEYIK 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,084
Number of Sequences: 5004
Number of extensions: 56337
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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