Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0104
(665 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g37910.1 68418.m04567 seven in absentia (SINA) family protein... 57 9e-09
At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putat... 53 2e-07
At3g58040.1 68416.m06470 seven in absentia (SINA) family protein... 51 8e-07
At2g41980.1 68415.m05193 seven in absentia (SINA) family protein... 50 1e-06
At5g37870.1 68418.m04561 seven in absentia (SINA) family protein... 50 1e-06
At4g27880.1 68417.m04002 seven in absentia (SINA) family protein... 49 2e-06
At3g61790.1 68416.m06933 seven in absentia (SINA) family protein... 48 4e-06
At5g62800.1 68418.m07883 seven in absentia (SINA) family protein... 48 6e-06
At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putat... 48 6e-06
At1g66650.1 68414.m07573 seven in absentia (SINA) protein, putat... 47 1e-05
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat... 47 1e-05
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 45 4e-05
At1g66630.1 68414.m07571 seven in absentia (SINA) family protein... 44 7e-05
At5g37930.1 68418.m04569 seven in absentia (SINA) family protein... 42 4e-04
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 42 4e-04
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 42 4e-04
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 42 4e-04
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 42 4e-04
At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99... 40 0.001
At1g67800.3 68414.m07738 copine-related low similarity to SP|Q99... 39 0.003
At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99... 39 0.003
At1g67800.1 68414.m07737 copine-related low similarity to SP|Q99... 39 0.003
At1g79380.1 68414.m09251 copine-related low similarity to SP|Q99... 38 0.005
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin... 36 0.024
At2g21380.1 68415.m02544 kinesin motor protein-related 35 0.042
At1g68820.1 68414.m07868 membrane protein, putative contains 7 t... 35 0.056
At3g14970.1 68416.m01893 zinc finger (C3HC4-type RING finger) fa... 32 0.39
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 32 0.39
At3g15740.1 68416.m01994 zinc finger (C3HC4-type RING finger) fa... 31 0.52
At1g46480.1 68414.m05213 homeobox-leucine zipper transcription f... 31 0.69
At4g20060.1 68417.m02935 expressed protein ; expression support... 30 1.2
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 30 1.6
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 30 1.6
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 29 3.7
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ... 29 3.7
At5g42200.1 68418.m05136 zinc finger (C3HC4-type RING finger) fa... 28 4.9
At2g39810.1 68415.m04890 expressed protein 28 4.9
At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger) fa... 28 4.9
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 28 6.4
At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge... 28 6.4
>At5g37910.1 68418.m04567 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 276
Score = 57.2 bits (132), Expect = 9e-09
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +3
Query: 153 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLS-VCPVCRALFFGTRNYAMEEL 329
L DLD +L CP+C E T IFQC+ GH CG C +LS CP C +R+ AME +
Sbjct: 30 LLDLD-ILDCPICCEALTSPIFQCDNGHLACGSCCPKLSNKCPACTLPVGHSRSRAMESV 88
Query: 330 IANV 341
+ ++
Sbjct: 89 LESI 92
>At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 286
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 153 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVCRALFFGTRNYAMEEL 329
L DL+ +L CP+CYE T IFQC+ GH C C +L + CP C + R AME +
Sbjct: 43 LMDLE-ILDCPICYEAFTIPIFQCDNGHLACSSCCPKLNNKCPACTSPVGHNRCRAMESV 101
Query: 330 IANV 341
+ ++
Sbjct: 102 LESI 105
>At3g58040.1 68416.m06470 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 308
Score = 50.8 bits (116), Expect = 8e-07
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 171 LLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVCRALFFGTRNYAMEEL 329
LL+CPVC + I QC GH +C CK+R+ + CP CR R A+E++
Sbjct: 57 LLECPVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCRYELGNIRCLALEKV 110
>At2g41980.1 68415.m05193 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 305
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 171 LLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVCRALFFGTRNYAMEEL 329
LL+CPVC + I QC GH +C CK+R+ + CP CR R A+E++
Sbjct: 54 LLECPVCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKV 107
>At5g37870.1 68418.m04561 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 281
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 153 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVCRALFFGTRNYAMEEL 329
L DLD +L CP+CY+ +FQC GH C C +L + CP C R AME +
Sbjct: 37 LTDLD-ILDCPICYQALKIPVFQCGNGHLACSSCCPKLRNKCPACALPVGHIRCRAMERV 95
Query: 330 IANV 341
+ +V
Sbjct: 96 LESV 99
>At4g27880.1 68417.m04002 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 327
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 171 LLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVCRALFFGTRNYAMEEL 329
LL+CPVC I QC+ GH +C CKVR+ + CP CR R A+E++
Sbjct: 61 LLECPVCTYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIRCLALEKV 114
>At3g61790.1 68416.m06933 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 326
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 171 LLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVCRALFFGTRNYAMEEL 329
LL+CPVC I QC+ GH +C CK R+ + CP CR R A+E++
Sbjct: 60 LLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKV 113
>At5g62800.1 68418.m07883 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 348
Score = 48.0 bits (109), Expect = 6e-06
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 135 ENKVDELPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLS-VC--PVCRALFFGT 305
E + +L DLD +L CPVC+E T FQC++GH VC C ++S C P C
Sbjct: 29 ETRSAKLLDLD-VLDCPVCFEPLTIPTFQCDDGHIVCNFCFAKVSNKCPGPGCDLPIGNK 87
Query: 306 RNYAMEELI 332
R +AME ++
Sbjct: 88 RCFAMERVL 96
>At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 313
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 168 NLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVCRALFFGTRNYAMEELIANV 341
+LL CP+C T IFQC+ GH C C +L + CP C R+ ME ++ V
Sbjct: 40 DLLDCPICCHALTSPIFQCDNGHIACSSCCTKLRNKCPSCALPIGNFRSRIMERVVEAV 98
>At1g66650.1 68414.m07573 seven in absentia (SINA) protein, putative
similar to SIAH2 protein [Brassica napus var. napus]
GI:7657878; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 329
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 153 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSV-CPVCRALFFGTRNYAMEEL 329
LP+ N+L+CP C++ IFQCN GH C C ++L C C+ R AME++
Sbjct: 78 LPN-SNVLECPNCFDPLKKPIFQCNNGHLACFLCCIKLKKRCSFCKLPIGDVRCRAMEKV 136
Query: 330 I 332
I
Sbjct: 137 I 137
>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 366
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 168 NLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLS-VCPVCRALFFGTRNYAMEELI 332
+LL CP+C T IFQC++GH C C +S CP C R+ ME ++
Sbjct: 52 DLLDCPICCNALTIPIFQCDKGHIACSSCCTNVSNKCPYCSLAIGNYRSRIMERVV 107
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 150 ELPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 290
++ D++ CP+C P F C GH C C L VCP+CRA
Sbjct: 436 QMSSADDIQLCPICLSNPKNMAFGC--GHQTCCECGPDLKVCPICRA 480
>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 303
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 153 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRC--KVRLSVCPVCRALFFGTRNYAMEE 326
L +LD LL CP+CY I+QC+ GH C C KV+ CP C R+ +E+
Sbjct: 41 LLELD-LLDCPICYHKLGAPIYQCDNGHIACSSCCKKVKYK-CPYCSLRIGFFRSRILEK 98
Query: 327 LIANV 341
++ V
Sbjct: 99 IVEAV 103
>At5g37930.1 68418.m04569 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 349
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 168 NLLQCPVCYEIPTGHIFQCNEGHNVCGRC--KVRLSVCPVCRALFFGTRNYAMEELI 332
++L CP+C E IFQC+ GH C C KVR + CP C R AME++I
Sbjct: 109 DVLDCPICCEPLKIPIFQCDNGHLACTLCCTKVR-NRCPSCTLPIGYVRCRAMEKVI 164
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +3
Query: 165 DNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 290
DN L CP+C P F C GH C C L +CP+CRA
Sbjct: 421 DNQL-CPICLSNPKDMAFGC--GHQTCCECGPDLQMCPICRA 459
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +3
Query: 165 DNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 290
DN L CP+C P F C GH C C L +CP+CRA
Sbjct: 421 DNQL-CPICLSNPKDMAFGC--GHQTCCECGPDLQMCPICRA 459
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +3
Query: 165 DNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 290
DN L CP+C P F C GH C C L +CP+CRA
Sbjct: 421 DNQL-CPICLSNPKDMAFGC--GHQTCCECGPDLQMCPICRA 459
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +3
Query: 165 DNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 290
DN L CP+C P F C GH C C L +CP+CRA
Sbjct: 421 DNQL-CPICLSNPKDMAFGC--GHQTCCECGPDLQMCPICRA 459
>At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 367
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 180 CPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCR 287
CP+C P F C GH C C V ++ CP+CR
Sbjct: 323 CPICLTNPKDMAFSC--GHTTCKECGVVITTCPLCR 356
>At1g67800.3 68414.m07738 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 433
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 180 CPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 290
CPVC F C GH C C L VCP+CR+
Sbjct: 390 CPVCLVSAKNMAFNC--GHQTCAGCGEDLHVCPICRS 424
>At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 453
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 180 CPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 290
CPVC F C GH C C L VCP+CR+
Sbjct: 410 CPVCLVSAKNMAFNC--GHQTCAGCGEDLHVCPICRS 444
>At1g67800.1 68414.m07737 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 433
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 180 CPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 290
CPVC F C GH C C L VCP+CR+
Sbjct: 390 CPVCLVSAKNMAFNC--GHQTCAGCGEDLHVCPICRS 424
>At1g79380.1 68414.m09251 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 401
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 180 CPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCR 287
CP+C F C GH CG C ++S CP+CR
Sbjct: 357 CPICLTNRKDVAFSC--GHMTCGDCGSKISNCPICR 390
>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
motor protein - Ustilago maydis, PID:g2062750; identical
to cDNA MKRP2 mRNA for kinesin-related protein
GI:16902293, kinesin-related protein [Arabidopsis
thaliana] GI:16902294
Length = 1055
Score = 35.9 bits (79), Expect = 0.024
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 120 MSEIVENKVDELPDLD-NLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCR 287
M E+ E ++ + D N C VC+E PT I +C C + S CP+CR
Sbjct: 987 MQEMKEKEMKSQANGDANSHICKVCFESPTAAILLPCRHFCLCKSCSLACSECPICR 1043
>At2g21380.1 68415.m02544 kinesin motor protein-related
Length = 1058
Score = 35.1 bits (77), Expect = 0.042
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 180 CPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCR 287
C VC+E PT I +C C + S CP+CR
Sbjct: 1011 CKVCFESPTATILLPCRHFCLCKSCSLACSECPICR 1046
>At1g68820.1 68414.m07868 membrane protein, putative contains 7
transmembrane domains; similar to inhibitor of
apoptosis-2 IAP-2 (GI:20043383) [Mamestra configurata
nucleopolyhedrovirus]
Length = 468
Score = 34.7 bits (76), Expect = 0.056
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 123 SEIVENKVDELPDLDN-LLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRAL 293
++I E L N + C VC+E P + H +C C + CP+CR L
Sbjct: 401 TDITSYSQQEYERLQNEKILCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICRVL 458
>At3g14970.1 68416.m01893 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 220
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 198 IPTGHIFQCNEGHNVCGRCKVRLS-VCPVCRALF 296
+P H+F H CG +R S +CPVCRA+F
Sbjct: 190 MPCSHVF-----HRTCGEDWLRCSGICPVCRAMF 218
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 31.9 bits (69), Expect = 0.39
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +3
Query: 156 PDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKV----RLSVCPVC 284
PDLD L CP+C +I F GH+ C C + S CP C
Sbjct: 44 PDLDKDLLCPICMQI-IKDAFLTACGHSFCYMCIITHLRNKSDCPCC 89
>At3g15740.1 68416.m01994 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 224
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 198 IPTGHIFQCNEGHNVCGRCKVRLS-VCPVCRALF 296
+P H+F H CG +R S +CPVCRALF
Sbjct: 194 MPCSHVF-----HRTCGEEWLRNSGICPVCRALF 222
>At1g46480.1 68414.m05213 homeobox-leucine zipper transcription
factor family protein similar to wuschel protein
(GI:22087128) [Arabidopsis thaliana]
Length = 251
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 580 TFATFILQNF*RDEQKAVNTFKHGRSPP 663
T ATF L+NF R +Q F+H R PP
Sbjct: 52 TSATFDLKNFIRPDQTGPTKFEHKRDPP 79
>At4g20060.1 68417.m02935 expressed protein ; expression supported by
MPSS
Length = 1134
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +3
Query: 210 HIFQCNEGHNVCGRCKVRLSVCPVCRALFFGTRNYAM----EELIANVRK 347
H+ N+ VCG+ K+ LS+C + +G +N +M EE+++ + K
Sbjct: 876 HLQSRNQVLRVCGKVKMLLSICRDALSCTYGLQNQSMSMHKEEIMSEITK 925
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 162 LDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKV 260
+ N+ CPVCY + T +C G+C++
Sbjct: 68 VSNVFHCPVCYCLATTRCSRCKAVRYCSGKCQI 100
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe}; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00628:
PHD-finger, PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 1648
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = +3
Query: 102 PTLFYIMSEIVENKVDELPDLDNLLQ----CPVCYEIPTGH--IFQCNEGHNVCGRC 254
P L + E V+ + +NLL+ CP+C+EI +FQC GH+ C C
Sbjct: 1298 PDLSSPIHETVDASDPAEQESENLLKRDEACPICHEILRNQKMVFQC--GHSTCCNC 1352
>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 141 KVDELPDLDNLLQCPVCYEIPTGHIF-QCNEGHNVC-GRCKVRLSVCPVCR 287
K D +PDL C +C E +F C GH C C L+ CP+CR
Sbjct: 288 KEDAVPDL-----CVICLEQEYNAVFVPC--GHMCCCTACSSHLTSCPLCR 331
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +3
Query: 111 FYIMSEIVENKVDELPDLDNLLQCPVCY--EIPTGHIFQCNEGHNVCGRCKVRLSVCPVC 284
F + E E + E + C +C E+ I C GH +C C +S CP C
Sbjct: 4637 FLLEQERAEASMKEAETAKSQWLCQICQTKEVEVT-IVPC--GHVLCRHCSTSVSRCPFC 4693
Query: 285 R 287
R
Sbjct: 4694 R 4694
>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 513
Score = 28.7 bits (61), Expect = 3.7
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +3
Query: 210 HIFQCNEGHNVCGRCKVRLSV 272
H+F+ ++G N+CG C+ ++ V
Sbjct: 146 HVFRISDGDNICGVCRSQVDV 166
>At5g42200.1 68418.m05136 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 163
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Frame = +3
Query: 150 ELPDLDNLLQCPVCYE-IPTGHIFQ----CNEG-HNVCGRCKV-RLSVCPVCRA 290
EL + +C VC E I +G + CN G H +C + +VCPVCRA
Sbjct: 94 ELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCRA 147
>At2g39810.1 68415.m04890 expressed protein
Length = 865
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +3
Query: 231 GH-NVCGRCKVRLSVCPVCRALF--FGTR 308
GH ++C C R VCP+CR+ FG R
Sbjct: 74 GHASLCTECCQRCDVCPICRSTLPKFGDR 102
>At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 467
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 123 SEIVENKVDELPDLDN-LLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCR 287
+EI + E L N + C VC+E + +C C + + CP+CR
Sbjct: 400 TEITKFSQQEYERLQNEKVLCRVCFEKDISLVLLPCRHRVLCRTCADKCTTCPICR 455
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = +3
Query: 147 DELPDLDNLLQCPVCYEIPTG-HIFQCNEGHNVCGRC-----KVRLSVCPVCRALF 296
+E+ + N+L+C VC++ P I +C H C +C ++R CP C F
Sbjct: 320 EEVKNCKNILKCGVCFDRPKEVVIVKCY--HLFCQQCIQRSLEIRHRKCPGCGTAF 373
>At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger
family protein / SET domain-containing protein similar
to trithorax-like protein 1 [Arabidopsis thaliana]
GI:12659210; contains Pfam domain, PF00628: PHD-finger
and PF00856: SET domain
Length = 1056
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +3
Query: 294 FFGTRNYAMEELIANVRKLRAFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENND 473
FFGT ++A R L+ +KL G++ + +D+ + +SG +++ G+D D
Sbjct: 359 FFGTHDFA--------RYLKEYKLPGRMDQLQKVADTDCSERINSGEEDSSNSGDDYTKD 410
Query: 474 NQ 479
+
Sbjct: 411 GE 412
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,185,000
Number of Sequences: 28952
Number of extensions: 292940
Number of successful extensions: 924
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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