Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0103
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)                  94   1e-19
SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)         45   5e-05
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          31   0.69 
SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)                31   0.91 
SB_43547| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)                        28   6.4  
SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)                  28   8.5  

>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
          Length = 938

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 38/68 (55%), Positives = 56/68 (82%)
 Frame = +3

Query: 252  PITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYL 431
            P TT T+V+G+KF+ G ++A DTLGSYGSLAR+R+  R+M+VN+  ++G  GDYADFQY+
Sbjct: 871  PTTTGTSVLGIKFNGGVLMAADTLGSYGSLARYRNISRLMRVNENTIIGAAGDYADFQYI 930

Query: 432  KDIIQQKI 455
            K +++QK+
Sbjct: 931  KSVLEQKV 938


>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
          Length = 291

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 2/147 (1%)
 Frame = +3

Query: 270 TVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQQ 449
           TV+ +  +   VIA DT  S G     RD P+V K+    +LGC G + D   L   I  
Sbjct: 89  TVLAISGEDFAVIASDTRLSQGFQIHTRDSPKVYKLTGSTVLGCSGFHGDCLTLTKHISA 148

Query: 450 KI-IDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI-QDGEPFLGAVDK 623
           ++ + E     G  +   ++   L+ +LY +R    P +   ++AG+  +G+  + + D 
Sbjct: 149 RLQMYEH--DHGKAMSCTAIAQMLSTMLYYRR--FFPYYTYNILAGLDSEGKGCVFSFDP 204

Query: 624 LGTAYEDAVISNGLGAYMATPLLRDAV 704
           +G+   +   + G  + +  PLL + +
Sbjct: 205 VGSYEREVYRAGGSASALLQPLLDNQI 231


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 702 LRPSVEESPCKLLARSRSQHLHRLFPIYQQLRERVHHPEYRQPHSCSR 559
           L  ++ ++  K  AR  + H H   PIYQ  +  VHHP+  +   C R
Sbjct: 393 LHKTLFDALLKDAARDDNPHEHAAMPIYQN-KTNVHHPDSPEHEHCLR 439


>SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
          Length = 958

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 135 TPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAHSASPITTTTTVIGVKFDK 296
           TP W N     A  N P N++   P  HG+    A++  P     T + +  D+
Sbjct: 468 TPAWANADQQQAQGNNPANSNADQPQDHGIYIVNANAGHPQAQEHTPVWMNADQ 521



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 135 TPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAHSASP 254
           TP W N     A  N P N++   P  HG+    A++  P
Sbjct: 423 TPAWVNADQQQAQGNNPANSNADQPQDHGIYIVNANADHP 462



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/58 (27%), Positives = 21/58 (36%)
 Frame = +3

Query: 123 TMNPTPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAHSASPITTTTTVIGVKFDK 296
           T    P W N     A  N P N+    P  HG+    A++  P     T   V  D+
Sbjct: 374 TQEHMPAWANADQQQAQGNNPANSKADQPQDHGIYIVNANADHPQAQEHTPAWVNADQ 431


>SB_43547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 148 KTDRRLEHFIIFLEMLPQLLHPGTVYRILQLTQRAPSRPPQLSSELSLTRDVLSPVTH 321
           +T+R L   +  ++++ +   P  VYRI  + +R  S   QLS  + LT    S   H
Sbjct: 163 RTERLLTGRLQTIDLVREFGSPTNVYRIADVVRRPFSEVLQLSGVIQLTEWEFSEACH 220


>SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)
          Length = 1220

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -3

Query: 606 ERVHHPEYRQPHSCSRGDPSCSSCCRGHESTSSAENGA*AGDHLQHSAH 460
           +   HPE   PHS +  + S SS    H ST+  +N +    H+    H
Sbjct: 457 QSAEHPEDHSPHSAASVENSSSSQHLEHNSTTHDDNQS-VSSHISDHDH 504


>SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)
          Length = 297

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 515 VDSCPLQQEEQDGSPLEQLCGCRY 586
           V   PL ++ +DG+PL   CG RY
Sbjct: 228 VAKTPLWRDAEDGTPLCNACGIRY 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,915,638
Number of Sequences: 59808
Number of extensions: 494807
Number of successful extensions: 1999
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1998
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)