Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0103
(704 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56450.1 68414.m06492 20S proteasome beta subunit G1 (PBG1) (... 132 2e-31
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P... 36 0.020
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 35 0.060
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 35 0.060
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 35 0.060
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 35 0.060
At3g55140.2 68416.m06124 pectate lyase family protein similar to... 29 4.0
At3g55140.1 68416.m06123 pectate lyase family protein similar to... 29 4.0
At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR cla... 29 4.0
At1g07725.1 68414.m00833 exocyst subunit EXO70 family protein co... 28 5.2
At5g04140.2 68418.m00402 glutamate synthase (GLU1) / ferredoxin-... 27 9.2
At5g04140.1 68418.m00401 glutamate synthase (GLU1) / ferredoxin-... 27 9.2
At4g05090.1 68417.m00756 inositol monophosphatase family protein... 27 9.2
At1g65690.1 68414.m07456 harpin-induced protein-related / HIN1-r... 27 9.2
At1g01620.1 68414.m00079 plasma membrane intrinsic protein 1C (P... 27 9.2
>At1g56450.1 68414.m06492 20S proteasome beta subunit G1 (PBG1)
(PRCH) identical to 20S proteasome beta subunit (PBG1)
GI:3421123 [Arabidopsis thaliana]; identical to cDNA
proteasome subunit prch GI:2511597
Length = 246
Score = 132 bits (319), Expect = 2e-31
Identities = 55/149 (36%), Positives = 96/149 (64%)
Frame = +3
Query: 252 PITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYL 431
P T T+++ +K+ G ++A D GSYGS R+++ RV + LLG G+ +DFQ +
Sbjct: 27 PYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEI 86
Query: 432 KDIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQDGEPFLG 611
+ + +++ DG L P+ +H +LTRV+YN+R+K +PLWN+ V+ G+++G+ +LG
Sbjct: 87 LRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNGKSYLG 146
Query: 612 AVDKLGTAYEDAVISNGLGAYMATPLLRD 698
V +G ++ED ++ G G ++A P+LRD
Sbjct: 147 MVSMIGVSFEDDHVATGFGNHLARPILRD 175
>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
(PRCD) identical to cDNA proteasome subunit prcd
GI:2511593
Length = 233
Score = 36.3 bits (80), Expect = 0.020
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +3
Query: 249 SPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQY 428
+P + TT+IGV ++ G V+ D+ S G R ++ ++ D + + G AD Q
Sbjct: 7 APHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQV 66
Query: 429 LKDIIQ 446
+ D ++
Sbjct: 67 VSDYVR 72
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 34.7 bits (76), Expect = 0.060
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +3
Query: 255 ITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 434
+ T TT++G+ F G ++ DT + G + ++C ++ + I G AD + +
Sbjct: 36 LKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 95
Query: 435 DIIQQKI 455
D++ ++
Sbjct: 96 DMVSSQL 102
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 34.7 bits (76), Expect = 0.060
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +3
Query: 255 ITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 434
+ T TT++G+ F G ++ DT + G + ++C ++ + I G AD + +
Sbjct: 36 LKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 95
Query: 435 DIIQQKI 455
D++ ++
Sbjct: 96 DMVSSQL 102
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 34.7 bits (76), Expect = 0.060
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +3
Query: 255 ITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 434
+ T TT++G+ F G ++ DT + G + ++C ++ + I G AD + +
Sbjct: 36 LKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 95
Query: 435 DIIQQKI 455
D++ ++
Sbjct: 96 DMVSSQL 102
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 34.7 bits (76), Expect = 0.060
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +3
Query: 255 ITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 434
+ T TT++G+ F G ++ DT + G + ++C ++ + I G AD + +
Sbjct: 36 LKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 95
Query: 435 DIIQQKI 455
D++ ++
Sbjct: 96 DMVSSQL 102
>At3g55140.2 68416.m06124 pectate lyase family protein similar to
pollen allergen Amb a 1.3 SP:P27761 from [Ambrosia
artemisiifolia]
Length = 307
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 477 DGLQLKPRSLHCWLTR 524
DG+Q+KP+S H W+ R
Sbjct: 97 DGIQIKPKSRHIWIDR 112
>At3g55140.1 68416.m06123 pectate lyase family protein similar to
pollen allergen Amb a 1.3 SP:P27761 from [Ambrosia
artemisiifolia]
Length = 331
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 477 DGLQLKPRSLHCWLTR 524
DG+Q+KP+S H W+ R
Sbjct: 121 DGIQIKPKSRHIWIDR 136
>At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR class),
putative domain signature NBS-LRR exists, suggestive of a
disease resistance protein.
Length = 1054
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 627 PIYQQLRERVHHPEYRQPHSCSRGDPSCSSCCRGHESTSSA 505
P+ QQ + HHP++ P S G P R ++S SS+
Sbjct: 1013 PMEQQ--PQYHHPQFHLPRSNVSGSPKSHGSHRSYDSRSSS 1051
>At1g07725.1 68414.m00833 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 566
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/79 (25%), Positives = 33/79 (41%)
Frame = +3
Query: 444 QQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQDGEPFLGAVDK 623
QQ+ E +GD ++ + W+T L + S L + + +G FL + K
Sbjct: 19 QQQGFSESLIGDSVEAADAFICQWVTPHLCDSSSSSCSLSSLFSAQNRLEGRRFLEVLGK 78
Query: 624 LGTAYEDAVISNGLGAYMA 680
L A + V N A +A
Sbjct: 79 LQYAIQSTVAMNPDSAKLA 97
>At5g04140.2 68418.m00402 glutamate synthase (GLU1) /
ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
identical to ferredoxin-dependent glutamate synthase
precursor [Arabidopsis thaliana] GI:3869251
Length = 1648
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 564 NSYVVAGIQDGEPFLGAVDKLGTAYEDAVISNGLGAYMAT 683
N YV G+ GE + V+K+G E+A I Y AT
Sbjct: 1456 NDYVGKGMAGGEIVVTPVEKIGFVPEEATIVGNTCLYGAT 1495
>At5g04140.1 68418.m00401 glutamate synthase (GLU1) /
ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
identical to ferredoxin-dependent glutamate synthase
precursor [Arabidopsis thaliana] GI:3869251
Length = 1622
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 564 NSYVVAGIQDGEPFLGAVDKLGTAYEDAVISNGLGAYMAT 683
N YV G+ GE + V+K+G E+A I Y AT
Sbjct: 1430 NDYVGKGMAGGEIVVTPVEKIGFVPEEATIVGNTCLYGAT 1469
>At4g05090.1 68417.m00756 inositol monophosphatase family protein
low similarity to SP|Q42546 3'(2'),5'-bisphosphate
nucleotidase (EC 3.1.3.7) (DPNPase) {Arabidopsis
thaliana}; contains Pfam profile PF00459: Inositol
monophosphatase family
Length = 397
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 406 ETMLIFSI*RISFNKKSLMSAVLEMVSSSSPVL 504
E LIF + + SL + +LEM+SS+SP L
Sbjct: 365 ERRLIFPAGGVVVSNGSLHNQILEMISSASPTL 397
>At1g65690.1 68414.m07456 harpin-induced protein-related /
HIN1-related / harpin-responsive protein-related similar
to hin1 homolog (GI:13122296) [Arabidopsis thaliana];
similar to hin1 (GI:22830759) [Nicotiana tabacum];
contains 1 transmembrane domain;
Length = 252
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 52 CRCFSYSFCQFLQILV 5
CRCF Y+FC FL +LV
Sbjct: 63 CRCFCYTFC-FLLLLV 77
>At1g01620.1 68414.m00079 plasma membrane intrinsic protein 1C
(PIP1C) / aquaporin PIP1.3 (PIP1.3) / transmembrane
protein B (TMPB) identical to plasma membrane intrinsic
protein 1c SP:Q08733 from [Arabidopsis thaliana]
Length = 286
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 156 PSPGAFYNFPGNASTIAPSRHGVQDFTAHSASPITTTTTVIGVK 287
P P F+ PG S+ + R G+ +F A T TV+GVK
Sbjct: 34 PPPAPFFE-PGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVK 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,944,988
Number of Sequences: 28952
Number of extensions: 341554
Number of successful extensions: 1076
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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